DW043240

EST Overview
NameDW043240
Unique NameDW043240
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length569
Libraries
Library NameType
LIBEST_018810 Subtracted cDNA library of Vaccinium corymbosumcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide2011-01-25
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
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BLAST of DW043240 vs. Vitis vinifera peptide
Match: GSVIVT01027944001 (assembled CDS)

HSP 1 Score: 50.0618 bits (118), Expect = 6.912e-7
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:   22 YAMLAAVLGIVSKFAGGCHIRAWRNDXXXXXXXXXXXXXXXTVLAFG 162
            +A+LA V+G+VSKF+GG HIRAWRND               T LAFG
Sbjct:   56 FAILAGVVGVVSKFSGGNHIRAWRNDSLAAAGSSALVAWAITALAFG 102
The following BLAST results are available for this feature:
BLAST of DW043240 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010279440016.912e-751.06assembled CDS[more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008390AWPM-19-likePFAMPF05512AWPM-19coord: 8..54
score: 2.6
NoneNo IPR availableSEGsegsegcoord: 34..48
score
NoneNo IPR availableSEGsegsegcoord: 9..21
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>DW043240 ID=DW043240; Name=DW043240; organism=Vaccinium corymbosum; type=EST; length=569bp
TCGAGCGGCCGCCCGGGCAGGTACGCGATGCTGGCAGCAGTGCTCGGGAT
CGTATCGAAATTTGCGGGCGGATGCCATATTCGCGCGTGGAGGAATGACA
GTCTAGCGGCCGCAGGAGCTTCCTCCTTGGTTGCATGGGCTGTCACTGTA
CTAGCTTTCGGGTAAATTTACTTTCGAAGATATCTTTATACGTTTCAAAC
TTTGTGGGCATATTTTTGTAAGTCTGTCATATGATGTTGTGACTATAGTT
TTAAATTTCGGTATCGGTCGCAATATCGGTGTATCGGTATCGGGACGTAT
CGGCGATATGTCTCGGGAATCGGTTGTCTCAGCCGTGAATTTTTTCAAAA
ATCATTAACAATATGTTTAAAATTTGATGGTACACTGTTTTTTTTCTCTC
ATTAGGTTAATTAATCACATTATAACCAATCTTAGCACATATAAAACTAA
TGGAACAAGTTTTTTACATAATTAATGGCTTAATTTGTCCACGTGTAGGT
GTAAAGGTGCTTTGATAGTACTTGGTTGTGTAGAACAGACATATAGTGAA
TACTTTTTCCACCCCAGCC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR008390AWPM-19
noIPRunintegrated