CV090410 | GDV

EST Overview


Name	CV090410
Unique Name	CV090410
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	749

Libraries


Library Name	Type
LIBEST_014530 cDNA cold acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CV090410 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0001s15170.1 ()

HSP 1 Score: 56.6102 bits (135), Expect = 1.910e-8
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 1

Query:  310 YXXKXHVNNDDXCXNPXXLFALXPXXSSLMLNXXXXMDENSDXNXXXDVPSXXSFPXXQLLXP 498
            Y  K  ++ND  C +P  LFAL P  SSLML+    +DE+SD +   D+PS  SF   +LL P
Sbjct:  467 YEIKELIDNDGSCFSPRSLFALPPDGSSLMLDSLHFVDESSDQDLLLDIPSNGSFAQAELLYP 529

[Close]

BLAST of CV090410 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0003s08080.2 ()

HSP 1 Score: 53.9138 bits (128), Expect = 1.238e-7
Identity = 27/67 (40.30%), Postives = 37/67 (55.22%), Query Frame = 1

Query:  310 YXXKXHVNNDDXCXNPXXLFALXPXXSSLMLNXXXXMDENSDXNXXXDVPSXXSFPXXQLLXPXSXF 510
            Y  K  ++ND  C +P  LFAL    SSLML+    +DE+SD +   D+PS  SF   +L  P + F
Sbjct:  452 YENKELIDNDGSCFSPRSLFALPTDGSSLMLDSLHFVDESSDQDLLLDIPSNGSFAQAELFYPTNSF 518

[Close]

BLAST of CV090410 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0003s08080.1 ()

HSP 1 Score: 53.9138 bits (128), Expect = 1.238e-7
Identity = 27/67 (40.30%), Postives = 37/67 (55.22%), Query Frame = 1

Query:  310 YXXKXHVNNDDXCXNPXXLFALXPXXSSLMLNXXXXMDENSDXNXXXDVPSXXSFPXXQLLXPXSXF 510
            Y  K  ++ND  C +P  LFAL    SSLML+    +DE+SD +   D+PS  SF   +L  P + F
Sbjct:  456 YENKELIDNDGSCFSPRSLFALPTDGSSLMLDSLHFVDESSDQDLLLDIPSNGSFAQAELFYPTNSF 522

[Close]

BLAST of CV090410 vs. Vitis vinifera peptide
Match: GSVIVT01005717001 (assembled CDS)

HSP 1 Score: 55.4546 bits (132), Expect = 2.584e-8
Identity = 33/92 (35.87%), Postives = 45/92 (48.91%), Query Frame = 1

Query:  235 DGQPXSFXEKKVTIXDXXKXTXXXLYXXKXHVNNDDXCXNPXXLFALXPXXSSLMLNXXXXMDENSDXNXXXDVPSXXSFPXXQLLXPXSXF 510
            D Q  +F E + T+    +     +   K H++N+    +P  LFAL P   SL L+     DE SD +   DVPS  SFP  +LL P S F
Sbjct:  207 DAQNQNFSEARTTMKSPRRVIMKAV--EKEHIDNEGSSFSPRSLFALPPDGGSLELDSFTFGDEISDHDLLLDVPSNNSFPQAELLHPGSGF 296

The following BLAST results are available for this feature:

BLAST of CV090410 vs. Populus trichocarpa peptide v2.0
BLAST of CV090410 vs. Vitis vinifera peptide

BLAST of CV090410 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 3


Match Name	E-value	Identity
POPTR_0001s15170.1	1.910e-8	44.44	[more]
POPTR_0003s08080.2	1.238e-7	40.30	[more]
POPTR_0003s08080.1	1.238e-7	40.30	[more]

BLAST of CV090410 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01005717001	2.584e-8	35.87	assembled CDS	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 22..29 score: NAcoord: 38..45 score: NAcoord: 57..78 score
None	No IPR available	SEG	seg	seg	coord: 4..29 score: NAcoord: 92..109 score
None	No IPR available	SEG	seg	seg	coord: 13..24 score: NAcoord: 26..39 score
None	No IPR available	SEG	seg	seg	coord: 3..16 score: NAcoord: 44..61 score
None	No IPR available	SEG	seg	seg	coord: 79..92 score: NAcoord: 94..105 score
None	No IPR available	SEG	seg	seg	coord: 6..27 score: NAcoord: 40..48 score
None	No IPR available	SEG	seg	seg	coord: 5..15 score: NAcoord: 32..39 score: NAcoord: 72..85 score: NAcoord: 122..132 score
None	No IPR available	SEG	seg	seg	coord: 26..46 score: NAcoord: 48..58 score: NAcoord: 59..70 score
None	No IPR available	SEG	seg	seg	coord: 2..9 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV090410 ID=CV090410; Name=CV090410; organism=Vaccinium corymbosum; type=EST; length=749bp
CATACCCTGCTTGNTAANTGCCTTGTTGATNTCCCNTTCTCTTCTNTNNN
CNNTNACTAATGTAGTCACATTGAACNANNTNGCATTGTGTTCNTTNNCC
ANANCACAGTGTNTGGAACAATATAATCTGCTCAANGATGGCAAGTGTCA
AAGTGCCANCCGANGTTCTNTACTCNANNGAGGATNTAATGCCNTTGCAT
CTGGTAAACCAACANATGATATGGAGATTGCACTGATGGCCAGCCTCNAT
CTTTTCNAGAGAAAAAAGTNACCATCNAGGACCNNAANAAGNNTACANAG
GNNGNTCTCTATGNNNACAAGGANCACGTAAACAACGATGACTNNTGCTN
TAATCCANAANTNCTATTTGCNTTGCNTCCCNATNNNAGCTCNCTAATGC
TCAACNCTTNCCANTNTATGGACGAGAATTCAGACCNTAATNTTTNANTT
GACGTTCCNTCNNNNNACTCCTTCCCACANNNNCAACTCCTCTTNCCTGN
TTCNNTTTTCATNTGCCCTGCACCGCGCTATTAGACAACTCATNACATAC
CTGCAACTATGATCCGGATCATGAACTATCTCNANGAAAACACNTGCATT
TAACTNTTCTNAAGAATTTGATGATACTACTTTTATAAATGCNCTGTTGT
CAATCGNAAATAGNTTGNAGCTNTNAACCGATACNAATGTCCNTTTGTGC
AAAAAGGTTTGATGGTGGTTGAATTTTCCTTTAAATGGACTTTTATTNT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
noIPR	unintegrated