DW043160

EST Overview
NameDW043160
Unique NameDW043160
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length597
Libraries
Library NameType
LIBEST_018810 Subtracted cDNA library of Vaccinium corymbosumcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
BLAST of DW043160 vs. DB:swissprot:display
Match: LEAD3_DAUCA (Late embryogenesis abundant protein Dc3 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.883e-7
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 2
Query:   29 MAS-EDQKYQAGETMGKAQEKTGQMTDNMKQKAQEAKDHALPRQAQGREKNKNHRRFQGN--QNRAGXI 226
            MAS +DQ Y+AGE  G AQEKTGQM D MK KAQ AKD A       R++    +   G+   ++AG +
Sbjct:    1 MASHQDQSYKAGEPKGHAQEKTGQMADTMKDKAQAAKDKASEMAGSARDRTVESKDQTGSYVSDKAGAV 69          
BLAST of DW043160 vs. DB:swissprot:display
Match: LEA1_CICAR (Late embryogenesis abundant protein 1 OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.883e-7
Identity = 36/104 (34.62%), Postives = 51/104 (49.04%), Query Frame = 2
Query:   29 MASEDQKYQAGETMGKAQEKTGQMTDNMKQKAQEAKDHALPRQAQGREKNKNHRRFQGNQNRAGXI*PRKKGTKAGQTTSSQNNRVAPKGQGLWQGRSRLTQGT 340
            MAS DQ Y+AGETMG+ +EKT QM  N++ KAQ AK+ A  +QA    K+K  +  Q  + +        K  K  QT  +  +      Q       + T+ T
Sbjct:    1 MASHDQSYKAGETMGRTEEKTNQMIGNIEDKAQAAKEKA--QQAAQTAKDKTSQTAQAAKEKTQQTAQAAK-EKTQQTAQAAKDETQQTAQAAKDKTQQTTEAT 101          
BLAST of DW043160 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0001s17310.1 ()

HSP 1 Score: 54.299 bits (129), Expect = 6.517e-8
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 2
Query:   29 MASEDQKYQAGETMGKAQEKTGQMTDNMKQKAQEAKDHALPRQAQGREK 175
            MAS +Q Y+AGE+ G+A+EKTG++T ++K+KA+E KD       Q +EK
Sbjct:    1 MASHEQSYRAGESHGRAEEKTGRVTGSIKEKAREVKDKTYETAQQAKEK 49          
BLAST of DW043160 vs. TrEMBL
Match: Q2QKE8|Q2QKE8_CATRO (Late embryogenesis abundant protein OS=Catharanthus roseus PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.937e-9
Identity = 44/117 (37.61%), Postives = 60/117 (51.28%), Query Frame = 2
Query:   29 MASEDQKYQAGETMGKAQEKTGQMTDNMKQKAQEAKDHA--LPRQAQGREKNKNHRRFQGNQNRAGXI*PRKKGTKAGQTTSSQNNRVAPKGQGLWQGRSRLTQ-GTPPQGPGKNKT 370
            MAS +Q Y+AGE  G+AQEKTGQM  ++K+K Q+AKD A    + AQGR + K  +      ++AG         K  +TT S   R +   +   Q  S + Q G      GK KT
Sbjct:    1 MASHEQSYKAGEAKGQAQEKTGQMMGDVKEKTQQAKDKASETAQSAQGRAQEKKDQTGSYVSDKAG-----AAKDKLSETTQSAKERASGAAEATKQKASEMAQSGKETAEAGKEKT 112          
BLAST of DW043160 vs. TAIR peptide
Match: AT3G15670.1 (| Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr3:5310141-5310901 REVERSE LENGTH=225)

HSP 1 Score: 54.299 bits (129), Expect = 5.743e-8
Identity = 35/102 (34.31%), Postives = 47/102 (46.08%), Query Frame = 2
Query:   29 MASEDQKYQAGETMGKAQEKTGQMTDNMKQKAQEAKDHALPRQAQGREKNKNHRRFQGNQNRAGXI*PRKKGTKAGQTTSSQNNRVAPKGQGLWQGRSRLTQ 334
            MAS  Q Y+AGET GKAQEKTGQ    M+ KA+E +D     Q     + K H   Q  +++      +    KA +T  S   + +   Q   Q     TQ
Sbjct:    1 MASNQQSYKAGETRGKAQEKTGQAMGTMRDKAEEGRDKT--SQTAQTAQQKAHETAQSAKDKTSQT-AQAAQQKAHETAQSAKEKTSQTAQTAQQKAHETTQ 99          
The following BLAST results are available for this feature:
BLAST of DW043160 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
LEAD3_DAUCA1.883e-746.38Late embryogenesis abundant protein Dc3 OS=Daucus ... [more]
LEA1_CICAR1.883e-734.62Late embryogenesis abundant protein 1 OS=Cicer ari... [more]
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BLAST of DW043160 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0001s17310.16.517e-848.98[more]
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BLAST of DW043160 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
Q2QKE8|Q2QKE8_CATRO1.937e-937.61Late embryogenesis abundant protein OS=Catharanthu... [more]
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BLAST of DW043160 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G15670.15.743e-834.31| Symbols: | Late embryogenesis abundant protein ... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 10..22
score
NoneNo IPR availableSEGsegsegcoord: 16..31
score
NoneNo IPR availableSEGsegsegcoord: 20..34
score
NoneNo IPR availableSEGsegsegcoord: 58..72
score: NAcoord: 81..94
score
NoneNo IPR availableSEGsegsegcoord: 31..45
score
IPR004238Late embryogenesis abundant protein, group 4PFAMPF02987LEA_4coord: 11..40
score: 0.

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>DW043160 ID=DW043160; Name=DW043160; organism=Vaccinium corymbosum; type=EST; length=597bp
CAGCTGTTAACAGAACTCCTTGTGAAAAATGGCATCTGAGGATCAGAAGT
ACCAAGCCGGTGAAACCATGGGCAAGGCTCAGGAGAAAACAGGCCAAATG
ACCGATAACATGAAGCAGAAGGCGCAAGAAGCCAAGGACCACGCCCTCCC
AAGACAGGCCCAAGGCCGCGAAAAGAACAAGAACCACCGGAGGTTCCAAG
GGAACCAAAACCGGGCAGGCTANATCTAACCGAGAAAAAAGGGGACCAAG
GCCGGGCAAACTACATCCTCCCAAAACAACCGGGTGGCGCCCAAAGGACA
AGGGCTGTGGCAGGGTCGTTCCAGGTTGACCCAAGGGACACCGCCTCAAG
GTCCGGGAAAGAACAAAACCCACCCCACCCCCATCCGGTAAATACCGGCG
GGAACCACGGTTCAAGATTCCCCTGGCCGCCAAAACGCCCCCCCGAAACC
AAGTTCAAAGAANCCCCGCCCGGGCCGGGCCCCCGTTGGGAAGCCCCCTG
AAAAAATCCCTCGGGGCCCTTGGGTTAACCCCGGAACCCCCCCCCATTTT
TGTGTTTAACCAAATTAATCTTTCTTGGGACACCCCTTCGCAANCTT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated
IPR004238LEA_4