HO054814

EST Overview
NameHO054814
Unique NameHO054814
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length212
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
[Close]
BLAST of HO054814 vs. DB:swissprot:display
Match: HB21_MOUSE (H-2 class II histocompatibility antigen, E-B beta chain OS=Mus musculus GN=H2-Eb1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERKGERVEEDFP 188
            SDVG F A   LG  +A+++NSQP+ LEQKRAEVDTVCRHNY +   F V R+ E     +P
Sbjct:   69 SDVGEFHAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEISDKFLVRRRVEPTVTVYP 130
[Close]
BLAST of HO054814 vs. DB:swissprot:display
Match: HB24_MOUSE (H-2 class II histocompatibility antigen, E-Q beta chain OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERKGERVEEDFP 188
            SDVG F A   LG  +A+++NSQP+ILEQKRA VDT CRHNY ++  F V R+ E     +P
Sbjct:   69 SDVGEFRAVTELGRPDAENWNSQPEILEQKRAAVDTYCRHNYEIFDNFLVRRRVEPTVTVYP 130
[Close]
BLAST of HO054814 vs. DB:swissprot:display
Match: HB2L_CHICK (Class II histocompatibility antigen, B-L beta chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.190e-10
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERKGERV 173
            SDVG FVAD  LGE +AK FNSQPD+LE+ RA V+ +C +NY +  P  ++R+  +V
Sbjct:   37 SDVGLFVADTVLGEPSAKLFNSQPDVLEKNRAAVEMLCNYNYEIVAPLTLQRREPKV 93
[Close]
BLAST of HO054814 vs. DB:swissprot:display
Match: 2B19_HUMAN (HLA class II histocompatibility antigen, DRB1-9 beta chain OS=Homo sapiens GN=HLA-DRB1 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.861e-10
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SDVG + A   LG   A+ +NSQ D LE++RAEVDTVCRHNYGV   F V+R+
Sbjct:   71 SDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRR 123
[Close]
BLAST of HO054814 vs. DB:swissprot:display
Match: HB2I_MOUSE (H-2 class II histocompatibility antigen, I-A beta chain OS=Mus musculus GN=H2-Eb1 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.736e-10
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERKGERVEEDFP 188
            SDVG F A   LG  +A+++NSQP+IL++KRA VDT CRHNY ++  F V R+ E     +P
Sbjct:   69 SDVGEFRAVTELGRPDAENWNSQPEILDEKRAAVDTYCRHNYEIFDNFLVPRRVEPTVTVYP 130
[Close]
BLAST of HO054814 vs. DB:swissprot:display
Match: 2B14_HUMAN (HLA class II histocompatibility antigen, DRB1-4 beta chain OS=Homo sapiens GN=HLA-DRB1 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.736e-10
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SDVG + A   LG  +A+ +NSQ D+LEQKRA VDT CRHNYGV   F V+R+
Sbjct:   71 SDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYCRHNYGVGESFTVQRR 123
[Close]
BLAST of HO054814 vs. DB:swissprot:display
Match: 2B11_HUMAN (HLA class II histocompatibility antigen, DRB1-1 beta chain OS=Homo sapiens GN=HLA-DRB1 PE=1 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 3.736e-10
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERKGERVEEDFPGE 194
            SDVG + A   LG  +A+ +NSQ D+LEQ+RA VDT CRHNYGV   F V+R+ E     +P +
Sbjct:   71 SDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSK 134
[Close]
BLAST of HO054814 vs. DB:swissprot:display
Match: 2B1F_HUMAN (HLA class II histocompatibility antigen, DRB1-15 beta chain OS=Homo sapiens GN=HLA-DRB1 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 6.373e-10
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SDVG F A   LG  +A+ +NSQ DILEQ RA VDT CRHNYGV   F V+R+
Sbjct:   71 SDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTVQRR 123
[Close]
BLAST of HO054814 vs. DB:swissprot:display
Match: HB23_MOUSE (H-2 class II histocompatibility antigen, E-S beta chain (Fragment) OS=Mus musculus GN=H2-Eb1 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 8.323e-10
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERKGERVEEDFP 188
            SDVG F A   LG  +A+++NSQP+ LEQ+RA VDT CRHNY +   F V R+ E     +P
Sbjct:   37 SDVGEFRAVTELGRPDAENWNSQPEFLEQRRAAVDTYCRHNYEILDKFLVPRRVEPTVTVYP 98
[Close]
BLAST of HO054814 vs. DB:swissprot:display
Match: 2B1E_HUMAN (HLA class II histocompatibility antigen, DRB1-14 beta chain OS=Homo sapiens GN=HLA-DRB1 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 8.323e-10
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SDVG + A   LG   A+ +NSQ D+LE++RAEVDT CRHNYGV   F V+R+
Sbjct:   71 SDVGEYRAVTELGRPAAEHWNSQKDLLERRRAEVDTYCRHNYGVVESFTVQRR 123
[Close]
BLAST of HO054814 vs. TrEMBL
Match: C1JEL1|C1JEL1_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.057e-17
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SDVGHFVAD PLGE  AK +NSQPDILEQ RAEVDT CR+NYGVWTPF VER+
Sbjct:   37 SDVGHFVADTPLGEPYAKYWNSQPDILEQTRAEVDTYCRNNYGVWTPFTVERR 89
[Close]
BLAST of HO054814 vs. TrEMBL
Match: C1JEK0|C1JEK0_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.057e-17
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SD+GHFVAD PLGE +AK +NSQPDILEQ RAEVDT CR+NYGVWTPF VER+
Sbjct:   37 SDLGHFVADTPLGEPDAKYWNSQPDILEQTRAEVDTYCRNNYGVWTPFTVERR 89
[Close]
BLAST of HO054814 vs. TrEMBL
Match: C1JEL5|C1JEL5_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.687e-17
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SD+GHFVAD PLGE +AK +NSQPDILEQ RAEVDTVCRHNYGV++PF VER+
Sbjct:   37 SDLGHFVADTPLGEPDAKYWNSQPDILEQTRAEVDTVCRHNYGVYSPFTVERR 89
[Close]
BLAST of HO054814 vs. TrEMBL
Match: C1JEJ6|C1JEJ6_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.334e-16
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SDVGHFVAD PLGE +AK FNSQPDI+EQKRAEVDT CR+NY V TPFAVER+
Sbjct:   37 SDVGHFVADTPLGEPDAKYFNSQPDIVEQKRAEVDTYCRNNYRVVTPFAVERR 89
[Close]
BLAST of HO054814 vs. TrEMBL
Match: C1JEJ4|C1JEJ4_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.742e-16
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SD+GH+VAD PLGE +AK +NSQPD+LEQ RAEVDT CR+NYGVWTPF V+R+
Sbjct:   37 SDLGHYVADTPLGEPSAKYWNSQPDLLEQTRAEVDTYCRNNYGVWTPFTVDRR 89
[Close]
BLAST of HO054814 vs. TrEMBL
Match: C1JEJ9|C1JEJ9_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.275e-16
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SD+GHFVAD PLGE +AK +NSQPD+LEQKRAEVDT CR+NYGV TPF VER+
Sbjct:   37 SDLGHFVADTPLGEPDAKYWNSQPDVLEQKRAEVDTYCRNNYGVLTPFIVERR 89
[Close]
BLAST of HO054814 vs. TrEMBL
Match: C1JEJ0|C1JEJ0_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.275e-16
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SDVGHFVAD PLGE +AK +NSQPD+LEQ RA VDT CR+NYGVWT FAVER+
Sbjct:   37 SDVGHFVADTPLGEPDAKYWNSQPDVLEQNRAVVDTYCRNNYGVWTHFAVERR 89
[Close]
BLAST of HO054814 vs. TrEMBL
Match: C1JEI6|C1JEI6_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.275e-16
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SDVGH+VAD PLGE +AK +NSQPD+LEQ RAEVDT CR+NYGVWTPF  ER+
Sbjct:   37 SDVGHYVADTPLGEPSAKYWNSQPDLLEQTRAEVDTYCRNNYGVWTPFTGERR 89
[Close]
BLAST of HO054814 vs. TrEMBL
Match: C4T8T6|C4T8T6_9AVES (DRB-like molecule (Fragment) OS=Spheniscus demersus GN=DRB-like PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.971e-16
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SDVG FVAD PLGE +AK +NSQ DILEQKRAEVDTVCRHNYGV TPF VER+
Sbjct:   61 SDVGQFVADTPLGEPDAKYWNSQTDILEQKRAEVDTVCRHNYGVSTPFIVERR 113
[Close]
BLAST of HO054814 vs. TrEMBL
Match: C1JEI5|C1JEI5_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.067e-16
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 3 
Query:    3 SDVGHFVADCPLGEINAKDFNSQPDILEQKRAEVDTVCRHNYGVWTPFAVERK 161
            SDVGH+VAD PLGE  AK +NSQPD+LEQ RAEVDT CR+NYGVWTPF  ER+
Sbjct:   37 SDVGHYVADTPLGEPYAKYWNSQPDLLEQTRAEVDTYCRNNYGVWTPFTGERR 89
The following BLAST results are available for this feature:
BLAST of HO054814 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
HB21_MOUSE1.981e-1154.84H-2 class II histocompatibility antigen, E-B beta ... [more]
HB24_MOUSE5.764e-1153.23H-2 class II histocompatibility antigen, E-Q beta ... [more]
HB2L_CHICK2.190e-1052.63Class II histocompatibility antigen, B-L beta chai... [more]
2B19_HUMAN2.861e-1058.49HLA class II histocompatibility antigen, DRB1-9 be... [more]
HB2I_MOUSE3.736e-1050.00H-2 class II histocompatibility antigen, I-A beta ... [more]
2B14_HUMAN3.736e-1058.49HLA class II histocompatibility antigen, DRB1-4 be... [more]
2B11_HUMAN3.736e-1050.00HLA class II histocompatibility antigen, DRB1-1 be... [more]
2B1F_HUMAN6.373e-1060.38HLA class II histocompatibility antigen, DRB1-15 b... [more]
HB23_MOUSE8.323e-1050.00H-2 class II histocompatibility antigen, E-S beta ... [more]
2B1E_HUMAN8.323e-1056.60HLA class II histocompatibility antigen, DRB1-14 b... [more]
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BLAST of HO054814 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
C1JEL1|C1JEL1_9AVES2.057e-1781.13MHC class II antigen (Fragment) OS=Pachyptila belc... [more]
C1JEK0|C1JEK0_9AVES2.057e-1779.25MHC class II antigen (Fragment) OS=Pachyptila belc... [more]
C1JEL5|C1JEL5_9AVES2.687e-1779.25MHC class II antigen (Fragment) OS=Pachyptila belc... [more]
C1JEJ6|C1JEJ6_9AVES1.334e-1681.13MHC class II antigen (Fragment) OS=Pachyptila belc... [more]
C1JEJ4|C1JEJ4_9AVES1.742e-1673.58MHC class II antigen (Fragment) OS=Pachyptila belc... [more]
C1JEJ9|C1JEJ9_9AVES2.275e-1677.36MHC class II antigen (Fragment) OS=Pachyptila belc... [more]
C1JEJ0|C1JEJ0_9AVES2.275e-1677.36MHC class II antigen (Fragment) OS=Pachyptila belc... [more]
C1JEI6|C1JEI6_9AVES2.275e-1675.47MHC class II antigen (Fragment) OS=Pachyptila belc... [more]
C4T8T6|C4T8T6_9AVES2.971e-1681.13DRB-like molecule (Fragment) OS=Spheniscus demersu... [more]
C1JEI5|C1JEI5_9AVES5.067e-1675.47MHC class II antigen (Fragment) OS=Pachyptila belc... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000353MHC class II, beta chain, N-terminalPFAMPF00969MHC_II_betacoord: 1..45
score: 1.2
IPR000353MHC class II, beta chain, N-terminalSMARTSM00921no descriptioncoord: 1..46
score: 2.2
IPR011162MHC classes I/II-like antigen recognition proteinSUPERFAMILY54452MHC antigen-recognition domaincoord: 1..52
score: 8
IPR014745MHC class II, alpha/beta chain, N-terminalGENE3D3.10.320.10no descriptioncoord: 1..50
score: 1
NoneNo IPR availablePANTHERPTHR19944MHC CLASS II-RELATEDcoord: 1..53
score: 1.2
NoneNo IPR availablePANTHERPTHR19944:SF26MHC CLASS II BETA CHAINcoord: 1..53
score: 1.2

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>HO054814 ID=HO054814; Name=HO054814; organism=Vaccinium corymbosum; type=EST; length=212bp
ACAGCGACGTGGGGCACTTTGTGGCCGACTGCCCCCTGGGCGAGATTAAT
GCCAAGGACTTCAACAGCCAGCCGGACATACTGGAGCAGAAACGGGCTGA
GGTGGACACCGTCTGCCGGCACAACTATGGGGTGTGGACCCCTTTCGCCG
TGGAGAGGAAAGGTGAGCGTGTGGAAGAGGATTTCCCTGGGGAACGGGCA
CAAGCCAGCCCC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Biological Process
TermDefinition
GO:0006955immune response
GO:0019882antigen processing and presentation
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0042613MHC class II protein complex
Vocabulary: INTERPRO
TermDefinition
IPR000353MHC class II, beta chain, N-terminal
IPR011162MHC_I/II-like_Ag-recog
IPR014745MHC class II, alpha/beta chain, N-terminal
noIPRunintegrated