CF810440

EST Overview
NameCF810440
Unique NameCF810440
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length639
Libraries
Library NameType
LIBEST_014530 cDNA cold acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide2011-01-25
Homology
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BLAST of CF810440 vs. TrEMBL
Match: A5AG81|A5AG81_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009094 PE=4 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 3.914e-7
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 2 
Query:  344 LCVITMAKKAVSKSLAFDNFQLQAGHAYGADPSSSGTVEAPQH*FQETVTSQQEGGSPMIPNRGNY 541
            + + T  +K V K++ FDN Q   G AYGAD SS G V++ QH +QET  +Q +   P  P   NY
Sbjct:  743 IALSTEPEKEVPKTMPFDNSQ---GLAYGADQSSYGVVDSSQHYYQETAPTQMQSSVPGSPYGDNY 805

HSP 2 Score: 27.335 bits (59), Expect = 3.914e-7
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 1 
Query:  565 PQMFVPSQAPQVQQ 606
            P MF+PSQAPQV Q
Sbjct:  830 PHMFLPSQAPQVPQ 843
[Close]
BLAST of CF810440 vs. TrEMBL
Match: D7TDM4|D7TDM4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_158.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00001441001 PE=4 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 3.917e-7
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 2 
Query:  344 LCVITMAKKAVSKSLAFDNFQLQAGHAYGADPSSSGTVEAPQH*FQETVTSQQEGGSPMIPNRGNY 541
            + + T  +K V K++ FDN Q   G AYGAD SS G V++ QH +QET  +Q +   P  P   NY
Sbjct:  700 IALSTEPEKEVPKTMPFDNSQ---GLAYGADQSSYGVVDSSQHYYQETAPTQMQSSVPGSPYGDNY 762

HSP 2 Score: 27.335 bits (59), Expect = 3.917e-7
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 1 
Query:  565 PQMFVPSQAPQVQQ 606
            P MF+PSQAPQV Q
Sbjct:  787 PHMFLPSQAPQVPQ 800
[Close]
BLAST of CF810440 vs. Vitis vinifera peptide
Match: GSVIVT01001441001 (assembled CDS)

HSP 1 Score: 51.2174 bits (121), Expect = 1.921e-9
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 2 
Query:  344 LCVITMAKKAVSKSLAFDNFQLQAGHAYGADPSSSGTVEAPQH*FQETVTSQQEGGSPMIPNRGNY 541
            + + T  +K V K++ FDN Q   G AYGAD SS G V++ QH +QET  +Q +   P  P   NY
Sbjct:  700 IALSTEPEKEVPKTMPFDNSQ---GLAYGADQSSYGVVDSSQHYYQETAPTQMQSSVPGSPYGDNY 762

HSP 2 Score: 27.335 bits (59), Expect = 1.921e-9
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 1 
Query:  565 PQMFVPSQAPQVQQ 606
            P MF+PSQAPQV Q
Sbjct:  787 PHMFLPSQAPQVPQ 800
The following BLAST results are available for this feature:
BLAST of CF810440 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A5AG81|A5AG81_VITVI3.914e-742.42Putative uncharacterized protein OS=Vitis vinifera... [more]
D7TDM4|D7TDM4_VITVI3.917e-742.42Whole genome shotgun sequence of line PN40024, sca... [more]
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BLAST of CF810440 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010014410011.921e-942.42assembled CDS[more]
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Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CF810440 ID=CF810440; Name=CF810440; organism=Vaccinium corymbosum; type=EST; length=639bp
TGACAAAGTCCATCACCGTACAACAGAACCATGGGAATGTATTGCAATCT
TTGACAATATATAGCTTGGGGAAAACGGTATCTCCGCGCAGGGTGAGGCA
TATTCAATTCAATTCGCACTTTTGTGTGTGCTGATTTTGCTACTTCCGAT
TAGGCCATGGGTGCTTTCCAATTTACTTGTTTGGTTTTCAAGTTACTGAG
TGAGGGATTTAGCTGACTGATAACAACTAGAGGCATGTACAGAGCTGGGC
AAAGCAAGGGCTGAGTTTCCTAAGGAACAAACTTGAAGTTCGCAGCGACT
AACACAATCCTAACTATTCGGACCCTTCCATTGAGTTGTTGAGCTTTGTG
TCATTACTATGGCAAAGAAAGCAGTATCCAAGTCTTTGGCTTTCGATAAC
TTTCAGTTACAAGCAGGGCACGCATACGGTGCTGATCCATCCAGTTCTGG
CACGGTTGAGGCTCCTCAACATTAGTTCCAGGAAACAGTGACTTCGCAAC
AGGAAGGAGGCAGTCCAATGATTCCTAATAGGGGAAATTACTAACTGTCA
TTTAGCTCTTCTTGCCTCAAATGTTTGTTCCATCCCAAGCACCTCAAGTT
CAACAGGCAACCCAGTTTCTGGACATATGATGCTTGGGN
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