CF810484

EST Overview
NameCF810484
Unique NameCF810484
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length600
Libraries
Library NameType
LIBEST_014530 cDNA cold acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
BLAST of CF810484 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0011s12200.1 ()

HSP 1 Score: 53.5286 bits (127), Expect = 1.123e-7
Identity = 47/148 (31.76%), Postives = 66/148 (44.59%), Query Frame = 2
Query:  140 VGDYVLPTFPTLRNLTHLRLLSGVNIGNSGXXXXXXXXXXX-CSPNLEVLVLEGKRCSSTKSWGPPLRVPHCLLFRLKEVEFRPSLGRKALEFEL-DFEVIKYLLKSAEVLKKMTIR---SQLLD-----SRQIAQFPRASKACIISF 553
            + D V    P + NL   + L+ + I  SG            CSP LEV +L       T  W  P  VP CL   LK +E+         E EL + E+ +YL+K+A VL+KMTI      + D     + ++ +  R S AC I F
Sbjct:  319 LSDAVHKKLPCVGNLPDFQNLTRLEIEASGNDRWLVLHEILKCSPKLEVFILYKDSTEKTPRWRNPEFVPRCLRSSLKVIEY------VGFESELGEIEMAEYLIKNALVLEKMTIEYGWKMIHDFKERVAERLTECRRGSTACRIVF 460          
BLAST of CF810484 vs. P. persica 1.0 peptide
Match: ppa020362m ()

HSP 1 Score: 59.3066 bits (142), Expect = 1.449e-9
Identity = 60/199 (30.15%), Postives = 89/199 (44.72%), Query Frame = 2
Query:   14 SLENLSSLLEAHFEIDLPIHLTNILTLLRGIANVKCLRF---HAKVGDYVLPTFPTLRNLTHLRL------LSGVNIGNSGXXXXXXXXXXXCSPNLEVLVLEGKRCSSTKS----WGPPLRVPHCLLFRLKEVEFRPSLGRKALEFELDFEVIKYLLKSAEVLKKMTIRS----QLLDSRQ-IAQFPRASKACIISFK 556
            SL N +   E ++  D      + + LL GI+NVK L     + + G+  LP FP L  L  +        L  V + N+              PNLE L LE       K     W PP  VP+CL+  LK +   P  G+K     +D E+ +YLL +  +L K+T+ +      LD R+ + +F RAS  C + +K
Sbjct:  257 SLVNANIDFEDYYFADRASLPKHAIALLAGISNVKYLSLKTSYLRAGE--LPFFPNLNKLKVVVYRCKYWDLLAVLLENA--------------PNLEDLDLEDGTMRDEKHSKLHWKPPKVVPNCLMSHLKTITLCPFRGQK-----IDMELAEYLLNNGHLLDKITLYASYFWHTLDVRRALPKFNRASMTCQVEYK 434          
BLAST of CF810484 vs. P. persica 1.0 peptide
Match: ppa022187m ()

HSP 1 Score: 58.5362 bits (140), Expect = 2.472e-9
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 2
Query:  266 SPNLEVLVLEGKRCSSTKSWGPPLRVPHCLLFRLKEVEFRPSLGRKALEFELDFEVIKYLLKSAEVLKKMTIRSQLLDSRQIAQFPRASKACIISF 553
            SPNLE LV+E K     + W  P  VP CL+  LK +  R   G     +  + ++ KYLLK  +VL KMTI + L  +++ +   RASKAC + F
Sbjct:   33 SPNLEYLVVEHK-----ERWRKPESVPVCLISHLKTITIRGFKG-----YPHEEKLAKYLLKEGQVLSKMTIYNDL--AKEFSMSQRASKACRVEF 116          
BLAST of CF810484 vs. TrEMBL
Match: A5BLF6|A5BLF6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040899 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.243e-13
Identity = 61/172 (35.47%), Postives = 85/172 (49.42%), Query Frame = 2
Query:   83 ILTLLRGIANVKCLRF--------HAKVGDYVLPTFPTLRNLTHLRLLSGVNIGNSGXXXXXXXXXXXCSPNLEVLVLEGKRCSST--KSWGPPLRVPHCLLFRLKEVEFRPSLGRKALEFELDFEVIKYLLKSAEVLKKMTI--RSQLLDS-----RQIAQFPRASKACII 547
            I  LL  I+NVKCL             +GDY LPTF    N+T L  L    IG  G            SPNLE LV+E    +    + W  PL+VP CL+  LKE+E R  +G      + + E ++YLLK+AEVL++MTI      +D      +++   PR S++C +
Sbjct:  296 IYELLGRISNVKCLSLTGVTLDSLSGTIGDYKLPTF---HNMTRLEFLF---IG--GFNWDFLPNFLHSSPNLEALVIETGYTNELIPEGWLMPLQVPACLVLHLKEIEIRRIVGE-----DYELEAVEYLLKNAEVLQQMTIDCHESYMDQEFCVCKKLLGLPRGSRSCFV 454          
BLAST of CF810484 vs. TrEMBL
Match: D7TQZ6|D7TQZ6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_93.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00038076001 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.608e-11
Identity = 65/204 (31.86%), Postives = 96/204 (47.06%), Query Frame = 2
Query:    5 EGFSLENLSSLLEAHFEI--------DLPIHLTNILTLLRGIANVKCLRF-----HAKVGDYVLPTFPTLRNLTHLRLLSGVNIGNSGXXXXXXXXXXXCSPNLEVLVLEG--KRCSSTKSWGPPLRVPHCLLFRLKEVEFRPSLGRKALEFELDFEVIKYLLKSAEVLKKMTI-------RSQLLDSRQIAQFPRASKACIIS 550
            E + + NLSSL++A+  +        D  ++   I  LLRGI+NVK L       H+  G +     P   ++T L L      G               SPNLE+L+LE   K     + W  PL+VP C+   L EVE +   G   L++EL    I++LLK+A VLKKM+I         +    ++++ F RAS +C  S
Sbjct:  206 EDYLMSNLSSLVKAYVNVGPTIRGIDDQILYRGRIYELLRGISNVKHLSLSGETLHSLSGMFCGYELPAFHSVTRLELEVDYGYG-----LEFLKEFLDTSPNLEILILENVNKDECEIEEWTLPLQVPTCVELHLNEVEIKKFDG---LDYELG--AIEFLLKNARVLKKMSIDCRDWRDGQEFCVCKKLSGFTRASMSCEFS 399          
BLAST of CF810484 vs. Vitis vinifera peptide
Match: GSVIVT01038076001 (assembled CDS)

HSP 1 Score: 73.1738 bits (178), Expect = 8.302e-14
Identity = 65/204 (31.86%), Postives = 96/204 (47.06%), Query Frame = 2
Query:    5 EGFSLENLSSLLEAHFEI--------DLPIHLTNILTLLRGIANVKCLRF-----HAKVGDYVLPTFPTLRNLTHLRLLSGVNIGNSGXXXXXXXXXXXCSPNLEVLVLEG--KRCSSTKSWGPPLRVPHCLLFRLKEVEFRPSLGRKALEFELDFEVIKYLLKSAEVLKKMTI-------RSQLLDSRQIAQFPRASKACIIS 550
            E + + NLSSL++A+  +        D  ++   I  LLRGI+NVK L       H+  G +     P   ++T L L      G               SPNLE+L+LE   K     + W  PL+VP C+   L EVE +   G   L++EL    I++LLK+A VLKKM+I         +    ++++ F RAS +C  S
Sbjct:  206 EDYLMSNLSSLVKAYVNVGPTIRGIDDQILYRGRIYELLRGISNVKHLSLSGETLHSLSGMFCGYELPAFHSVTRLELEVDYGYG-----LEFLKEFLDTSPNLEILILENVNKDECEIEEWTLPLQVPTCVELHLNEVEIKKFDG---LDYELG--AIEFLLKNARVLKKMSIDCRDWRDGQEFCVCKKLSGFTRASMSCEFS 399          
BLAST of CF810484 vs. TAIR peptide
Match: AT3G49030.1 (| Symbols: | FBD, F-box and Leucine Rich Repeat domains containing protein | chr3:18173138-18174769 FORWARD LENGTH=443)

HSP 1 Score: 51.9878 bits (123), Expect = 2.878e-7
Identity = 52/193 (26.94%), Postives = 83/193 (43.01%), Query Frame = 2
Query:   17 LENLSSLLEAHFEIDLPIHLTNILTLLRGIANVKCLRFHAKVGDYVLPTFPTLRNLTHLRLLSGVNIGNSGXXXXXXXXXXXCSPNLEVLVLEGKRCSST----KSWGPPLRVPHCLLFRLKEVEFRPSLGRKALEFELDFEVIKYLLKSAEVLKKMTIRSQLLD----------SRQIAQFPRASKACIISF 553
            +EN   L+EA  EI    H+ N   +L  + +VK L   + +     PT      L +L +L+                    SP L++L L G  C       ++W PP  VP CLLF L++  +     ++  E     EV  Y+L++A +LKK T  ++ +D            ++A   RAS +C + F
Sbjct:  261 IENAPELVEA--EISDVSHIANE-NILESLTSVKRLSLESPI-KIKFPTGKVFDQLVYLDVLT-----KEREWWNLLSRMLESSPKLQILKLTGLSCIEKGLDGQNWNPPKCVPECLLFHLEKFLWTGYEWQRGDE----KEVATYILENARLLKKATFSTKRIDLENLEKRREMLNELASVARASDSCHLVF 440          
The following BLAST results are available for this feature:
BLAST of CF810484 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0011s12200.11.123e-731.76[more]
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BLAST of CF810484 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
ppa020362m1.449e-930.15[more]
ppa022187m2.472e-939.58[more]
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BLAST of CF810484 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A5BLF6|A5BLF6_VITVI2.243e-1335.47Putative uncharacterized protein OS=Vitis vinifera... [more]
D7TQZ6|D7TQZ6_VITVI1.608e-1131.86Whole genome shotgun sequence of line PN40024, sca... [more]
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BLAST of CF810484 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010380760018.302e-1431.86assembled CDS[more]
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BLAST of CF810484 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G49030.12.878e-726.94| Symbols: | FBD, F-box and Leucine Rich Repeat d... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006566FBD-likeSMARTSM00579no descriptioncoord: 116..185
score: 0.
IPR013596FBDPFAMPF08387FBDcoord: 108..162
score: 1.5
NoneNo IPR availableSEGsegsegcoord: 77..87
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CF810484 ID=CF810484; Name=CF810484; organism=Vaccinium corymbosum; type=EST; length=600bp
GCCGGAGGGATTTTCATTGGAGAACTTATCATCATTGTTGGAAGCACACT
TTGAGATTGATTTACCCATCCATTTGACCAACATACTCACACTTCTTCGT
GGGATTGCAAATGTTAAGTGTCTTCGGTTTCATGCCAAGGTTGGGGACTA
TGTTCTGCCAACTTTCCCTACTCTCCGTAATTTGACACATCTACGACTTT
TGAGTGGCGTAAACATTGGCAATAGTGGCTTCAACTTGAACTTGCTAAAT
GAGTTTCTTGAATGCTCGCCTAATCTCGAAGTTCTTGTTCTCGAGGGAAA
GAGATGCTCTTCAACCAAATCCTGGGGTCCACCTCTGAGGGTGCCTCATT
GTTTGTTATTTCGTCTCAAGGAAGTTGAGTTTCGGCCCTCCTTAGGTAGA
AAAGCCCTCGAGTTTGAACTCGATTTTGAAGTGATAAAATACTTGCTGAA
AAGTGCTGAAGTTCTGAAGAAAATGACAATCCGTTCTCAGCTTTTAGATA
GCCGGCAGATAGCACAATTTCCAAGGGCGTCAAAGGCTTGTATAATTTCC
TTTAAAGTTTAAACGCTATCTCTGAGAAGTCTAGTGTATCTCATCCAGAN
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR006566FBD-like
IPR013596FBD
noIPRunintegrated