CF810743

EST Overview
NameCF810743
Unique NameCF810743
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length614
Libraries
Library NameType
LIBEST_014530 cDNA cold acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
BLAST of CF810743 vs. DB:swissprot:display
Match: PP331_ARATH (Pentatricopeptide repeat-containing protein At4g21170 OS=Arabidopsis thaliana GN=At4g21170 PE=2 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 5.576e-10
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  218 RHNWAPLLRTLN--LSSSQLTPSLFLHILRKTKTNPQVSLSFFNWAKSSLGFEPDLKTLVTLSEILIGSGLSRQAKPVLDALIKDNPPTRIVNSAVRTCRG 514
            R NW   L+ +   L  S LT  +FL ILR+T+  P+ +L FF++AK+ L FEPDLK+   + E+   SGL  +A+ +L  L++ N  + +V    R   G
Sbjct:   48 RRNWITHLQYVKSKLPRSTLTSPVFLQILRETRKCPKTTLDFFDFAKTHLRFEPDLKSHCRVIEVAAESGLLERAEMLLRPLVETNSVSLVVGEMHRWFEG 148          
BLAST of CF810743 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0004s02020.1 ()

HSP 1 Score: 95.5153 bits (236), Expect = 2.701e-20
Identity = 45/99 (45.45%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  218 RHNWAPLLRTLNLSSSQLTPSLFLHILRKTKTNPQVSLSFFNWAKSSLGFEPDLKTLVTLSEILIGSGLSRQAKPVLDALIKDNPPTRIVNSAVRTCRG 514
            RHNW  LL+  NLS+ +LTP LF  IL KT+TNPQ+SL FFNW +++L  +PDLK+   +  I + SGL+   +P++D+L+K +  + +  + V +CRG
Sbjct:   34 RHNWVSLLQNFNLST-KLTPPLFNQILHKTQTNPQISLRFFNWVQTNLKLKPDLKSQCHIINICVNSGLTLPVRPIMDSLVKTHHVSVLGEAMVDSCRG 131          
BLAST of CF810743 vs. P. persica 1.0 peptide
Match: ppa018797m ()

HSP 1 Score: 110.153 bits (274), Expect = 7.501e-25
Identity = 56/122 (45.90%), Postives = 74/122 (60.66%), Query Frame = 2
Query:  152 LNWRXXXXXXXXXXXXXXXXXXRHNWAPLLRTLNLSSSQLTPSLFLHILRKTKTNPQVSLSFFNWAKSSLGFEPDLKTLVTLSEILIGSGLSRQAKPVLDALIKDNPPTRIVNSAVRTCRGS 517
            L+WR                  R NW PLLR L+L   +LTP+LFL IL KT+ NPQVSL FFNWAK +L FEPDLK+   +  + +GSGL R  KP+LD+LI+ +P + +V      C+G+
Sbjct:   17 LSWRTNIKQAQLASQISYALLQRRNWVPLLRNLSLFP-KLTPALFLQILHKTQNNPQVSLEFFNWAKVNLRFEPDLKSNCQIIRVSLGSGLVRPVKPILDSLIQTHPVSELVQCITLACKGT 137          
BLAST of CF810743 vs. TrEMBL
Match: B9RXQ8|B9RXQ8_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0905670 PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.838e-21
Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 2
Query:  152 LNWRXXXXXXXXXXXXXXXXXXRHNWAPLLRTLNLSSSQLTPSLFLHILRKTKTNPQVSLSFFNWAKSSLGFEPDLKTLVTLSEILIGSGLSRQAKPVLDALIKDNPPTRIVNSAVRTCRG 514
            ++WR                  R+NW PLL+ LNLSS +LTP LF  IL KT+T+ Q+SL+FFNWAK++L F PDLK+   + ++ +GS L R AK +LD+LIK  P    + + V+ CRG
Sbjct:   41 ISWRTRIQQNQLVSEISTILLQRNNWIPLLQNLNLSS-KLTPFLFFQILHKTQTHAQISLNFFNWAKTNLNFNPDLKSQCHVIQLSLGSDLPRAAKKILDSLIKTYPSNLFLETMVQACRG 160          
BLAST of CF810743 vs. TrEMBL
Match: B9H1G1|B9H1G1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_758454 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.244e-18
Identity = 45/99 (45.45%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  218 RHNWAPLLRTLNLSSSQLTPSLFLHILRKTKTNPQVSLSFFNWAKSSLGFEPDLKTLVTLSEILIGSGLSRQAKPVLDALIKDNPPTRIVNSAVRTCRG 514
            RHNW  LL+  NLS+ +LTP LF  IL KT+TNPQ+SL FFNW +++L  +PDLK+   +  I + SGL+   +P++D+L+K +  + +  + V +CRG
Sbjct:   34 RHNWVSLLQNFNLST-KLTPPLFNQILHKTQTNPQISLRFFNWVQTNLKLKPDLKSQCHIINICVNSGLTLPVRPIMDSLVKTHHVSVLGEAMVDSCRG 131          
BLAST of CF810743 vs. TrEMBL
Match: D7MFE5|D7MFE5_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_658006 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.046e-8
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  218 RHNWAPLLRTLN--LSSSQLTPSLFLHILRKTKTNPQVSLSFFNWAKSSLGFEPDLKTLVTLSEILIGSGLSRQAKPVLDALIKDNPPTRIVNSAVRTCRG 514
            R NW   L+ +   L  S LT  +FL I+R+T+  P+ +L FF++AK+ L FEPDLK+   + E+   SGL  +A+ +L  L++ +  + +V S  R   G
Sbjct:   48 RRNWISHLQYVKSKLPRSTLTSPIFLQIIRETRKCPKTTLDFFDFAKTHLRFEPDLKSHCRVIEVATESGLLERAETLLRPLVETHSVSLVVGSMHRWFEG 148          
BLAST of CF810743 vs. TAIR peptide
Match: AT4G21170.1 (| Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11286756-11288513 REVERSE LENGTH=551)

HSP 1 Score: 64.3142 bits (155), Expect = 5.800e-11
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  218 RHNWAPLLRTLN--LSSSQLTPSLFLHILRKTKTNPQVSLSFFNWAKSSLGFEPDLKTLVTLSEILIGSGLSRQAKPVLDALIKDNPPTRIVNSAVRTCRG 514
            R NW   L+ +   L  S LT  +FL ILR+T+  P+ +L FF++AK+ L FEPDLK+   + E+   SGL  +A+ +L  L++ N  + +V    R   G
Sbjct:   48 RRNWITHLQYVKSKLPRSTLTSPVFLQILRETRKCPKTTLDFFDFAKTHLRFEPDLKSHCRVIEVAAESGLLERAEMLLRPLVETNSVSLVVGEMHRWFEG 148          
The following BLAST results are available for this feature:
BLAST of CF810743 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
PP331_ARATH5.576e-1037.62Pentatricopeptide repeat-containing protein At4g21... [more]
back to top
BLAST of CF810743 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0004s02020.12.701e-2045.45[more]
back to top
BLAST of CF810743 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
ppa018797m7.501e-2545.90[more]
back to top
BLAST of CF810743 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
B9RXQ8|B9RXQ8_RICCO1.838e-2144.63Pentatricopeptide repeat-containing protein, putat... [more]
B9H1G1|B9H1G1_POPTR3.244e-1845.45Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7MFE5|D7MFE5_ARALY1.046e-836.63Predicted protein OS=Arabidopsis lyrata subsp. lyr... [more]
back to top
BLAST of CF810743 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G21170.15.800e-1137.62| Symbols: | Tetratricopeptide repeat (TPR)-like ... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 55..76
score
NoneNo IPR availableSEGsegsegcoord: 38..50
score: NAcoord: 55..72
score
NoneNo IPR availableSEGsegsegcoord: 22..35
score: NAcoord: 47..63
score
NoneNo IPR availableSEGsegsegcoord: 22..36
score: NAcoord: 50..62
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CF810743 ID=CF810743; Name=CF810743; organism=Vaccinium corymbosum; type=EST; length=614bp
CCGCGCAGTGCGAAGACATTTGCTGTTACATACATCCACTGTTGAAAGCT
TTGAAGCGCAACCAGCTAATTCAACTCCAATGCTACTGCACAGACCCCGT
CATATGATCAAATCCTTCTCCACTTCAACACCACCACCAAACACAACTTC
TCTCAACTGGAGATCTCAAATCAAACAATCCCAACTGGTCTCCCAAATCT
CCTCCATTCTCCTGCAGAGGCACAACTGGGCCCCACTCCTGCGCACCCTC
AACCTCTCCTCCTCCCAACTCACCCCATCCCTCTTCCTCCACATCCTTCG
CAAAACCAAAACCAACCCACAAGTCTCTCTCAGCTTCTTCAATTGGGCAA
AATCAAGCCTAGGGTTTGAACCTGACCTCAAAACCCTAGTTACCCTATCC
GAGATCCTAATCGGGTCCGGCCTTTCCCGACAGGCGAAACCCGTTTTGGA
TGCTCTGATTAAGGACAACCCACCAACCCGAATTGTTAATTCAGCAGTCA
GAACTTGTAGAGGTAGTCGAGAGGTAGATAGGTGTAGTTCGTGACTTGGT
CCATTTTGGCAGGAAATGTTGATCTCTTTGAGGAGTCTGGAGGAGAAGAA
AGGGGATGGAATTC
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated