CF810862 | GDV

EST Overview


Name	CF810862
Unique Name	CF810862
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	643

Libraries


Library Name	Type
LIBEST_014530 cDNA cold acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CF810862 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0012s13180.1 ()

HSP 1 Score: 65.855 bits (159), Expect = 2.474e-11
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 2

Query:  125 SNYLSKIDDPTGAVRADGEEAGITGMRHSFDKMNVYNE-------LESKPKSEQAPELFTESQDQFSPEPTLPQSTTNAND------------AEDVPVDNVTKLPSNQSGYT 406
            SNY +K+ DPTG+    G+EAGIT + +SFDKMN+Y+E       L +  +  Q   L T S DQFS EPT P S ++  +            +++  +  +   P NQSGYT
Sbjct:  223 SNYQTKVTDPTGS---GGKEAGITPILYSFDKMNIYDESRGEKQNLSTGSRDGQLSLLPTGSHDQFSAEPTPPISISSQENPVSGSKSFVTLKSKEHTLGGIGDKPPNQSGYT 332

[Close]

BLAST of CF810862 vs. TrEMBL
Match: B9I491|B9I491_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_823477 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.072e-9
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 2

Query:  125 SNYLSKIDDPTGAVRADGEEAGITGMRHSFDKMNVYNE-------LESKPKSEQAPELFTESQDQFSPEPTLPQSTTNAND------------AEDVPVDNVTKLPSNQSGYT 406
            SNY +K+ DPTG+    G+EAGIT + +SFDKMN+Y+E       L +  +  Q   L T S DQFS EPT P S ++  +            +++  +  +   P NQSGYT
Sbjct:  219 SNYQTKVTDPTGS---GGKEAGITPILYSFDKMNIYDESRGEKQNLSTGSRDGQLSLLPTGSHDQFSAEPTPPISISSQENPVSGSKSFVTLKSKEHTLGGIGDKPPNQSGYT 328

[Close]

BLAST of CF810862 vs. Vitis vinifera peptide
Match: GSVIVT01028976001 (assembled CDS)

HSP 1 Score: 56.6102 bits (135), Expect = 9.179e-9
Identity = 43/114 (37.72%), Postives = 52/114 (45.61%), Query Frame = 2

Query:  128 NYLSKIDDPTGAVRADGEEAGITGMRHSFDKMNVYNELESKPKSEQAPELFTESQDQFSPEPTLPQSTTNANDAEDVPVDNVTKLPSNQSGYTSXXXXXXXXXXXXXXWTLGYG 469
            NY +K+ DPTG     GEE  I  +  SFDK++V +      K EQ     T S DQFSPEP LP  T    D +D    N  + PSN+  YT                 LGYG
Sbjct:  122 NYQTKVADPTGD---GGEEVVIAPIISSFDKISVQD------KPEQPFATRTGSHDQFSPEP-LPAETKTTEDPQDT---NNAEKPSNEKTYTEKISTAAISAKNTVASKLGYG 222

The following BLAST results are available for this feature:

BLAST of CF810862 vs. Populus trichocarpa peptide v2.0
BLAST of CF810862 vs. TrEMBL
BLAST of CF810862 vs. Vitis vinifera peptide

BLAST of CF810862 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
POPTR_0012s13180.1	2.474e-11	38.05		[more]

BLAST of CF810862 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 1


Match Name	E-value	Identity	Description
B9I491\|B9I491_POPTR	3.072e-9	38.05	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]

BLAST of CF810862 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01028976001	9.179e-9	37.72	assembled CDS	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012418	CAP160	PFAM	PF07918	CAP160	coord: 135..156 score: 1.6
None	No IPR available	SEG	seg	seg	coord: 29..41 score: NAcoord: 137..150 score: NAcoord: 171..184 score: NAcoord: 200..211 score
None	No IPR available	SEG	seg	seg	coord: 29..40 score
None	No IPR available	SEG	seg	seg	coord: 4..18 score: NAcoord: 31..44 score: NAcoord: 65..78 score
None	No IPR available	SEG	seg	seg	coord: 30..43 score
None	No IPR available	SEG	seg	seg	coord: 36..51 score
None	No IPR available	SEG	seg	seg	coord: 31..42 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF810862 ID=CF810862; Name=CF810862; organism=Vaccinium corymbosum; type=EST; length=643bp
ATCCGCTGGGAATTTTGTCCACGGGGAAGTGGCCGGTCACACCGGGCAAC
GTCCGAAGATCAGCATGGAAACACCAACGTGCATGGAGGAGGATCCTCCT
GCGCCTAAAGACGAGCCTGAAGCGTCTAATTATCTGAGCAAAATCGATGA
TCCTACTGGCGCTGTTCGAGCAGACGGCGAGGAAGCCGGGATCACTGGAA
TGCGCCACTCTTTCGACAAAATGAATGTCTACAACGAACTAGAATCGAAA
CCGAAATCCGAACAGGCACCTGAATTGTTCACAGAAAGCCAGGATCAGTT
CTCTCCAGAACCAACTCTACCGCAATCCACCACCAACGCCAATGATGCCG
AAGACGTACCCGTCGATAACGTTACCAAGCTACCATCGAACCAAAGCGGT
TACACTTCTGCAATAGCTGATAAGGCAATTGCAGCTAAAAATGCGGTTGC
TTGGACGTTGGGGTACGGCGCTAACCAAGATGAGACTGCATCATTGGGTA
CTTTGTATACGCAAAAACAAGAAGGAGAAGGCAAGGAGGGAGAGAAACAG
AAGCCTGTGGCGATAGTGACAGAGTTTGAGGAAGTGACGGAGCCATTGGG
AAGCGATGANGGATCCGAAGAGGGAGATGACGGAAACTGAATB

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR012418	CAP160
noIPR	unintegrated