CF810978

EST Overview
NameCF810978
Unique NameCF810978
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length488
Libraries
Library NameType
LIBEST_014530 cDNA cold acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
BLAST of CF810978 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0001s35830.1 ()

HSP 1 Score: 76.2554 bits (186), Expect = 1.095e-14
Identity = 52/129 (40.31%), Postives = 62/129 (48.06%), Query Frame = 2
Query:   98 TLFTTKPSHPFLS---KPIKFSPLSAPFPSWVSLKNKFSSSSGVVPLVAHTSDWAQXXXXXXXXXNPVEGFNWXXXXXXXXXXXXXXXXXXXXXXXXXXAKVFVGGLPFDIDSEKLAQLFDQAXVVEIA 475
            T+F T    PF+S   KPIK    S  FPSWVSLK    S+   +PLVA TSDWAQ            E F                            AK++VG LP+D++SE LAQLFDQA  VE+A
Sbjct:   15 TVFDTSIKSPFISITSKPIKVV-FSTSFPSWVSLKTSNFSTFNTIPLVAQTSDWAQQDEEDTVTLGE-ESFG--------------DGSEETFPEPPEEAKLYVGNLPYDVNSENLAQLFDQAGTVEVA 127          
BLAST of CF810978 vs. P. persica 1.0 peptide
Match: ppa009286m ()

HSP 1 Score: 82.8037 bits (203), Expect = 8.358e-17
Identity = 61/155 (39.35%), Postives = 79/155 (50.97%), Query Frame = 2
Query:   29 MTSATGPLIKSLLIPKCCITAVPTLFTTKPSHPFL---SKPIKFS---PLSAPFPSWVSLKNKFSSSSGVVPLVAHTSDWAQXXXXXXXXXNPVEGFNWXXXXXXXXXXXXXXXXXXXXXXXXXXAKVFVGGLPFDIDSEKLAQLFDQAXVVEIA 475
            M SAT  L K+L I   C+ ++P L +TK ++ FL   SKPIK       ++ F   +SLKNK   SS +V  VA TSDWAQ         +  EG                             AKVFVG LP+D+DS+KLA+LF++A VVEIA
Sbjct:    1 MASATSNLFKTLSIADSCLVSLPYLSSTKTANSFLSIPSKPIKLHLTYTHASHFSPPLSLKNKTQFSS-IVSFVAQTSDWAQQEEDSTLTIDQDEG------AESGEEGVFAEREEEANVEPPEEAKVFVGNLPYDVDSQKLAELFERAGVVEIA 148          
BLAST of CF810978 vs. P. persica 1.0 peptide
Match: ppa008913m ()

HSP 1 Score: 82.0333 bits (201), Expect = 1.426e-16
Identity = 61/168 (36.31%), Postives = 79/168 (47.02%), Query Frame = 2
Query:   29 MTSATGPLIKSLLIPKCCITAVPTLFTTKPSHPFL---SKPIKFSPLSAPF----PSWVSLKNKFSSSSGVVPL-VAHTSDWAQ-----------XXXXXXXXXNPVEGFNWXXXXXXXXXXXXXXXXXXXXXXXXXXAKVFVGGLPFDIDSEKLAQLFDQAXVVEIA 475
            M+SAT   +K + I + C+ +VP LF  K  +P L   SKP K S +S  F    PSWVSLK+K       +PL VA TSDWAQ                    + VE                              AK++VG LP+D+DSEKLA +F++A VVEIA
Sbjct:    1 MSSATAAFLKPISIAESCLPSVPALFAPKNQYPILSLPSKPTKLSAVSCSFTPSLPSWVSLKHK------SLPLHVAQTSDWAQEEEVKEEGSGFESEGVEETEDGVEASALSDGEESSGDGVLAVGEEEYYPEPPEEAKLYVGNLPYDVDSEKLAHIFNEAGVVEIA 162          
BLAST of CF810978 vs. TrEMBL
Match: D7TWF3|D7TWF3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00032361001 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.445e-17
Identity = 63/137 (45.99%), Postives = 73/137 (53.28%), Query Frame = 2
Query:   80 CITAVPT-LFTTKPSHPFLS---KPIKFSPLSAP-FPSWVSLKNKFSSSSGVVPLVAHTSDWAQXXXXXXXXXNPVEGFNWXXXXXXXXXXXXXXXXXXXXXXXXXXAKVFVGGLPFDIDSEKLAQLFDQAXVVEIA 475
            C+T+VPT LFTTK  HP LS   KP++   LS     SWVSLK K +S + +VP VA TSDWAQ            EG                             AK+FVG LP+DIDSEKLAQLFD+A VVEIA
Sbjct:    5 CLTSVPTTLFTTKTPHPLLSLPPKPVRLFHLSCSCSSSWVSLKTK-TSPTTLVPFVAQTSDWAQQEEEEEKDGEESEG------------------SEDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIA 122          
BLAST of CF810978 vs. TrEMBL
Match: C6T9I0|C6T9I0_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.327e-10
Identity = 51/153 (33.33%), Postives = 67/153 (43.79%), Query Frame = 2
Query:   29 MTSATGPLIKSLLIPKCCITAVPTLFTTKPSHPFLSKPIKFSPLSAPFP----SWVSLKNKFSSSSGVVPLVAHTSDWAQXXXXXXXXXNPVEGFNWXXXXXXXXXXXXXXXXXXXXXXXXXXAKVFVGGLPFDIDSEKLAQLFDQAXVVEIA 475
            M+  T    KSL + + C+ ++P+LF  K +   LS P K  PL+   P    S   L  K +  S ++  VA TSDWA+            E  +W                           K+FVG LPFDIDSE LA LF QA  VE+A
Sbjct:    4 MSLTTVAAFKSLTMAESCLLSLPSLFYAKNNTLSLSIPTK--PLNLHLPCSNSSLFPLTTKTTRHSSLLTFVAQTSDWAKEEEE--------EETSWENQGDTAWGTEEGGHEEGGFAEKAEEDKIFVGNLPFDIDSENLASLFGQAGTVEVA 146          
BLAST of CF810978 vs. Vitis vinifera peptide
Match: GSVIVT01032361001 (assembled CDS)

HSP 1 Score: 91.2781 bits (225), Expect = 2.022e-19
Identity = 63/137 (45.99%), Postives = 73/137 (53.28%), Query Frame = 2
Query:   80 CITAVPT-LFTTKPSHPFLS---KPIKFSPLSAP-FPSWVSLKNKFSSSSGVVPLVAHTSDWAQXXXXXXXXXNPVEGFNWXXXXXXXXXXXXXXXXXXXXXXXXXXAKVFVGGLPFDIDSEKLAQLFDQAXVVEIA 475
            C+T+VPT LFTTK  HP LS   KP++   LS     SWVSLK K +S + +VP VA TSDWAQ            EG                             AK+FVG LP+DIDSEKLAQLFD+A VVEIA
Sbjct:    5 CLTSVPTTLFTTKTPHPLLSLPPKPVRLFHLSCSCSSSWVSLKTK-TSPTTLVPFVAQTSDWAQQEEEEEKDGEESEG------------------SEDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIA 122          
BLAST of CF810978 vs. Vitis vinifera peptide
Match: GSVIVT01007596001 (assembled CDS)

HSP 1 Score: 78.1814 bits (191), Expect = 1.771e-15
Identity = 62/158 (39.24%), Postives = 77/158 (48.73%), Query Frame = 2
Query:   29 MTSATGPLIKSLLIPKCCITAVPTLFTTKPSHPFL----SKPIKF---SPLSAPFPSWVSLKNKFSSSSGVVPLVAHTSDWAQ--XXXXXXXXXNPVEGFNWXXXXXXXXXXXXXXXXXXXXXXXXXXAKVFVGGLPFDIDSEKLAQLFDQAXVVEIA 475
            M+SAT  L+K   IP     ++PT+F+TK  H +L     KPIK       S+ F   + LK+K  SSS VV  VA TSDWAQ              E   W                          AKVFVG LP+D+DSE+LA+LF+QA VVEIA
Sbjct:    1 MSSATHHLLKPFSIPNGSPISLPTIFSTKTPHSYLPIPPHKPIKLLLSCSQSSLFSPSLFLKSKTLSSS-VVTFVAQTSDWAQQEEDNTVIIEEEQEEKVTW-ENEEAISDDGVVDDGEDSYSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIA 156          
The following BLAST results are available for this feature:
BLAST of CF810978 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0001s35830.11.095e-1440.31[more]
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BLAST of CF810978 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
ppa009286m8.358e-1739.35[more]
ppa008913m1.426e-1636.31[more]
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BLAST of CF810978 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
D7TWF3|D7TWF3_VITVI3.445e-1745.99Whole genome shotgun sequence of line PN40024, sca... [more]
C6T9I0|C6T9I0_SOYBN5.327e-1033.33Putative uncharacterized protein (Fragment) OS=Gly... [more]
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BLAST of CF810978 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 2
Match NameE-valueIdentityDescription
GSVIVT010323610012.022e-1945.99assembled CDS[more]
GSVIVT010075960011.771e-1539.24assembled CDS[more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 3..16
score: NAcoord: 42..59
score: NAcoord: 68..77
score
NoneNo IPR availableSEGsegsegcoord: 1..8
score: NAcoord: 86..94
score: NAcoord: 103..128
score
NoneNo IPR availableSEGsegsegcoord: 4..35
score: NAcoord: 57..66
score: NAcoord: 75..90
score: NAcoord: 121..130
score
NoneNo IPR availableSEGsegsegcoord: 2..24
score: NAcoord: 27..36
score: NAcoord: 114..121
score
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 118..155
score: 0.0

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CF810978 ID=CF810978; Name=CF810978; organism=Vaccinium corymbosum; type=EST; length=488bp
CTCTCTCTCTCTCTCTCTCTCTCTTGAGATGACTTCTGCAACCGGACCTC
TCATCAAGTCATTGCTCATCCCCAAGTGCTGCATAACCGCTGTACCAACA
CTCTTCACCACCAAACCCTCACACCCATTCCTCTCAAAACCCATTAAATT
CTCTCCTCTTTCTGCTCCATTCCCTTCATGGGTTTCTCTCAAAAACAAGT
TTTCGTCATCATCCGGNGTCGTTCCGCTCGTTGCGCATACCTCGGATTGG
GCCCAAGAAGAGGAGAAAGAGGAAAAAGAANAGAACCCAGTTGAGGGTTT
TAATTGGGGAGGTGAAGAGGAGAGTGGAGAGGGAAGTGGAGATGTGGAGG
AGAGTGAAGATTCCTACTCTGAGCCACCTGAAGAAGCTAAGGTTTTTGTT
GGGGGTTTGCCTTTTGACATTGACAGTGAAAAATTGGCTCAGCTTTTTGA
TCAGGCTGNTGTTGTTGAGATTGCNTGAGGTAATTTAC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
noIPRunintegrated