DW043040

EST Overview
NameDW043040
Unique NameDW043040
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length400
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
[Close]
BLAST of DW043040 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0012s13880.1 ()

HSP 1 Score: 50.447 bits (119), Expect = 3.959e-7
Identity = 29/72 (40.28%), Postives = 39/72 (54.17%), Query Frame = 3 
Query:   15 GQVPSLILEESSSNLAIPSEDLSPKHR-QSPRATVTXXXXXXXXXXXXXXXYRGIRCRSGKWVSEIREPRKS 227
            GQ  ++  +E S     P + +S +   QSPR+T +               Y+GIR RSGKWVSEIREPRK+
Sbjct:   65 GQPLTVRQDEYSPRFGFPGQPVSGRQDDQSPRSTRSSGGSSTQPTSGRHPSYKGIRLRSGKWVSEIREPRKT 136
The following BLAST results are available for this feature:
BLAST of DW043040 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0012s13880.13.959e-740.28[more]
back to top
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-bindingGENE3D3.30.730.10no descriptioncoord: 54..75
score: 0.0
NoneNo IPR availableSEGsegsegcoord: 40..54
score
NoneNo IPR availableSEGsegsegcoord: 25..38
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>DW043040 ID=DW043040; Name=DW043040; organism=Vaccinium corymbosum; type=EST; length=400bp
TCGAGCGGCCGCCCGGGCAGGTACCTTCGTTAATCTTGGAAGAATCGAGT
TCCAACTTGGCAATACCTTCTGAAGACCTATCTCCCAAACACCGTCAGTC
ACCCAGAGCAACCGTTACATCACCGTCGAGTGGAGGCGGCGGATGGTCGG
GGAGGCACCCGAGTTATCGAGGGATACGGTGCAGGAGCGGGAAATGGGTA
TCGGAAATACGCGAGCCGCGTAAGTCCGCCGAGGATTAAGGGGCCGCCGT
CTGATGATGCAGTGGAGAATTCAGATGATGAAAGTTATCTATGGAGTTAA
TTAGGTGACTCTGTTTTCGGGATTATTTCTAAGTAATGATTTATAAACAG
GATTGTTGTATACAAAATTTATTGAGAAAGGCTGTTCGTTGTGTTTGGTC
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
noIPRunintegrated