DW043138 | GDV

EST Overview


Name	DW043138
Unique Name	DW043138
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	472

Libraries


Library Name	Type
LIBEST_018810 Subtracted cDNA library of Vaccinium corymbosum	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of DW043138 vs. DB:swissprot:display
Match: RNF75_MOUSE (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.535e-17
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   33 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 66

HSP 2 Score: 30.4166 bits (67), Expect = 2.535e-17
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  188 KRFEIKKWNAVAL 226
            KRFE+KKWNAVAL
Sbjct:   20 KRFEVKKWNAVAL 32

HSP 3 Score: 21.557 bits (44), Expect = 2.535e-17
Identity = 18/43 (41.86%), Postives = 19/43 (44.19%), Query Frame = 1

Query:  331 ECTVARGVCQ-----PCIPTLSPAITPLASRPR*VCPPLDNNE 444
            ECTVA GVC       CI            + R VC PLDN E
Sbjct:   67 ECTVAWGVCNHAFHFHCISRW--------LKTRQVC-PLDNRE 100

[Close]

BLAST of DW043138 vs. DB:swissprot:display
Match: RBX1_SALSA (RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.535e-17
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   33 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 66

HSP 2 Score: 30.4166 bits (67), Expect = 2.535e-17
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  188 KRFEIKKWNAVAL 226
            KRFE+KKWNAVAL
Sbjct:   20 KRFEVKKWNAVAL 32

HSP 3 Score: 21.557 bits (44), Expect = 2.535e-17
Identity = 18/43 (41.86%), Postives = 19/43 (44.19%), Query Frame = 1

Query:  331 ECTVARGVCQ-----PCIPTLSPAITPLASRPR*VCPPLDNNE 444
            ECTVA GVC       CI            + R VC PLDN E
Sbjct:   67 ECTVAWGVCNHAFHFHCISRW--------LKTRQVC-PLDNRE 100

[Close]

BLAST of DW043138 vs. DB:swissprot:display
Match: RBX1_HUMAN (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.535e-17
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   33 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 66

HSP 2 Score: 30.4166 bits (67), Expect = 2.535e-17
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  188 KRFEIKKWNAVAL 226
            KRFE+KKWNAVAL
Sbjct:   20 KRFEVKKWNAVAL 32

HSP 3 Score: 21.557 bits (44), Expect = 2.535e-17
Identity = 18/43 (41.86%), Postives = 19/43 (44.19%), Query Frame = 1

Query:  331 ECTVARGVCQ-----PCIPTLSPAITPLASRPR*VCPPLDNNE 444
            ECTVA GVC       CI            + R VC PLDN E
Sbjct:   67 ECTVAWGVCNHAFHFHCISRW--------LKTRQVC-PLDNRE 100

[Close]

BLAST of DW043138 vs. DB:swissprot:display
Match: RBX1A_DROME (RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.535e-17
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   33 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 66

HSP 2 Score: 30.4166 bits (67), Expect = 2.535e-17
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  188 KRFEIKKWNAVAL 226
            KRFE+KKWNAVAL
Sbjct:   20 KRFEVKKWNAVAL 32

HSP 3 Score: 21.557 bits (44), Expect = 2.535e-17
Identity = 18/43 (41.86%), Postives = 19/43 (44.19%), Query Frame = 1

Query:  331 ECTVARGVCQ-----PCIPTLSPAITPLASRPR*VCPPLDNNE 444
            ECTVA GVC       CI            + R VC PLDN E
Sbjct:   67 ECTVAWGVCNHAFHFHCISRW--------LKTRQVC-PLDNRE 100

[Close]

BLAST of DW043138 vs. DB:swissprot:display
Match: RBX1B_ARATH (RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.861e-16
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIEC  NQASATS+
Sbjct:   40 WAWDIVVDNCAICRNHIMDLCIECLANQASATSE 73

HSP 2 Score: 30.8018 bits (68), Expect = 3.861e-16
Identity = 12/17 (70.59%), Postives = 16/17 (94.12%), Query Frame = 2

Query:  176 TKKAKRFEIKKWNAVAL 226
            +K +KRFE+KKW+AVAL
Sbjct:   23 SKNSKRFELKKWSAVAL 39

[Close]

BLAST of DW043138 vs. DB:swissprot:display
Match: RBX1_DICDI (RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.462e-15
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            W WDIVVDNCAICRNHIMDLCIECQ NQAS TS+
Sbjct:   29 WIWDIVVDNCAICRNHIMDLCIECQANQASNTSE 62

HSP 2 Score: 28.1054 bits (61), Expect = 3.462e-15
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  188 KRFEIKKWNAVAL 226
            K+FE+K+WNAVAL
Sbjct:   16 KKFEVKRWNAVAL 28

HSP 3 Score: 20.7866 bits (42), Expect = 3.462e-15
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = 1

Query:  331 ECTVARGVC 357
            ECTVA G+C
Sbjct:   63 ECTVAWGIC 71

[Close]

BLAST of DW043138 vs. DB:swissprot:display
Match: RBX1_CAEEL (RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.407e-14
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDI VDNCAICRNHIMDLCIECQ NQA+   D
Sbjct:   35 WAWDIQVDNCAICRNHIMDLCIECQANQAAGLKD 68

HSP 2 Score: 28.4906 bits (62), Expect = 4.407e-14
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  188 KRFEIKKWNAVAL 226
            KRFE+KKW+AVAL
Sbjct:   22 KRFEVKKWSAVAL 34

[Close]

BLAST of DW043138 vs. DB:swissprot:display
Match: RBX1_SCHPO (RING-box protein pip1 OS=Schizosaccharomyces pombe GN=pip1 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 4.581e-14
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATS 326
            W WDIVVDNCAICRNHIMDLCIECQ N  SA +
Sbjct:   32 WQWDIVVDNCAICRNHIMDLCIECQANTDSAAA 64

HSP 2 Score: 30.4166 bits (67), Expect = 4.581e-14
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2

Query:  179 KKAKRFEIKKWNAVAL 226
            +K  RFEIKKWNAVAL
Sbjct:   16 QKPPRFEIKKWNAVAL 31

HSP 3 Score: 20.7866 bits (42), Expect = 4.581e-14
Identity = 8/11 (72.73%), Postives = 8/11 (72.73%), Query Frame = 1

Query:  325 ATECTVARGVC 357
            A ECTVA G C
Sbjct:   64 AQECTVAWGTC 74

[Close]

BLAST of DW043138 vs. DB:swissprot:display
Match: RBX1A_ARATH (RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.709e-14
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   43 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 76

[Close]

BLAST of DW043138 vs. DB:swissprot:display
Match: RBX1_YEAST (RING-box protein HRT1 OS=Saccharomyces cerevisiae GN=HRT1 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.092e-10
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 3

Query:  204 KSGTLSLSWAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            K  T    W+WDI VDNCAICRNHIM+ CIECQ    + T +
Sbjct:   38 KKWTAVAFWSWDIAVDNCAICRNHIMEPCIECQPKAMTDTDN 79

HSP 2 Score: 28.4906 bits (62), Expect = 1.092e-10
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 2

Query:  182 KAKRFEIKKWNAVA 223
            K KRFEIKKW AVA
Sbjct:   31 KKKRFEIKKWTAVA 44

[Close]

BLAST of DW043138 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0001s16760.1 ()

HSP 1 Score: 76.2554 bits (186), Expect = 1.248e-18
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   35 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 68

HSP 2 Score: 33.4982 bits (75), Expect = 1.248e-18
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 2

Query:  176 TKKAKRFEIKKWNAVAL 226
            ++K KRFEIKKWNAVAL
Sbjct:   18 SRKPKRFEIKKWNAVAL 34

[Close]

BLAST of DW043138 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s14360.1 ()

HSP 1 Score: 76.2554 bits (186), Expect = 1.307e-18
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   42 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 75

HSP 2 Score: 33.4982 bits (75), Expect = 1.307e-18
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 2

Query:  176 TKKAKRFEIKKWNAVAL 226
            +KK KRFEIKKWNAV+L
Sbjct:   25 SKKPKRFEIKKWNAVSL 41

[Close]

BLAST of DW043138 vs. P. persica 1.0 peptide
Match: ppa013561m ()

HSP 1 Score: 76.2554 bits (186), Expect = 1.437e-19
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   41 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 74

HSP 2 Score: 36.1946 bits (82), Expect = 1.437e-19
Identity = 16/17 (94.12%), Postives = 16/17 (94.12%), Query Frame = 2

Query:  176 TKKAKRFEIKKWNAVAL 226
            TKK KRFEIKKWNAVAL
Sbjct:   24 TKKPKRFEIKKWNAVAL 40

[Close]

BLAST of DW043138 vs. P. persica 1.0 peptide
Match: ppa013547m ()

HSP 1 Score: 76.2554 bits (186), Expect = 7.296e-15
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   42 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 75

[Close]

BLAST of DW043138 vs. TrEMBL
Match: C6T2R2|C6T2R2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.513e-22
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   43 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 76

HSP 2 Score: 36.5798 bits (83), Expect = 6.513e-22
Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = 1

Query:   79 MASLDTDVTMVPAGEGSSDAPPS 147
            MA+LD+DVTMVPAGE S+ A PS
Sbjct:    1 MATLDSDVTMVPAGEPSTSAGPS 23

HSP 3 Score: 35.039 bits (79), Expect = 6.513e-22
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2

Query:  176 TKKAKRFEIKKWNAVAL 226
            TKK KRFEIKKWNAV+L
Sbjct:   26 TKKPKRFEIKKWNAVSL 42

[Close]

BLAST of DW043138 vs. TrEMBL
Match: A5ARK4|A5ARK4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003357 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.814e-21
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   45 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 78

HSP 2 Score: 35.8094 bits (81), Expect = 1.814e-21
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1

Query:   79 MASLDTDVTMVPAGEGSSDAPPS 147
            MASLD+DVTMVP GE S  A PS
Sbjct:    1 MASLDSDVTMVPVGEPSGSAGPS 23

HSP 3 Score: 34.2686 bits (77), Expect = 1.814e-21
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 2

Query:  179 KKAKRFEIKKWNAVAL 226
            KK KRFEIKKWNAVAL
Sbjct:   29 KKPKRFEIKKWNAVAL 44

[Close]

BLAST of DW043138 vs. TrEMBL
Match: B9T8A0|B9T8A0_RICCO (Ring finger, putative OS=Ricinus communis GN=RCOM_0083800 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.782e-21
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   41 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 74

HSP 2 Score: 36.1946 bits (82), Expect = 6.782e-21
Identity = 16/17 (94.12%), Postives = 16/17 (94.12%), Query Frame = 2

Query:  176 TKKAKRFEIKKWNAVAL 226
            TKK KRFEIKKWNAVAL
Sbjct:   24 TKKPKRFEIKKWNAVAL 40

HSP 3 Score: 31.9574 bits (71), Expect = 6.782e-21
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 1

Query:   88 LDTDVTMVPAGEGSSDA 138
            +DTDVTMVPAGE SS A
Sbjct:    1 MDTDVTMVPAGEASSSA 17

[Close]

BLAST of DW043138 vs. TrEMBL
Match: B9RR99|B9RR99_RICCO (Ring finger, putative OS=Ricinus communis GN=RCOM_0711530 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.091e-19
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   45 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 78

HSP 2 Score: 31.5722 bits (70), Expect = 3.091e-19
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 2

Query:  176 TKKAKRFEIKKWNAVAL 226
            +KK K FEIKKWNAVAL
Sbjct:   28 SKKPKCFEIKKWNAVAL 44

HSP 3 Score: 30.8018 bits (68), Expect = 3.091e-19
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 1

Query:   79 MASLDTDVTMVPAGEGSSDAPPS 147
            MA+LD+DV MVP GE SS+   S
Sbjct:    1 MATLDSDVPMVPVGESSSNVASS 23

[Close]

BLAST of DW043138 vs. TrEMBL
Match: A9NMC5|A9NMC5_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.367e-18
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   44 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 77

HSP 2 Score: 38.1206 bits (87), Expect = 6.367e-18
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 2

Query:  176 TKKAKRFEIKKWNAVAL 226
            TKKAKRFEIKKWNAVAL
Sbjct:   27 TKKAKRFEIKKWNAVAL 43

[Close]

BLAST of DW043138 vs. TrEMBL
Match: C5XEZ9|C5XEZ9_SORBI (Putative uncharacterized protein Sb03g008660 OS=Sorghum bicolor GN=Sb03g008660 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.196e-18
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   49 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 82

HSP 2 Score: 31.5722 bits (70), Expect = 7.196e-18
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 2

Query:  179 KKAKRFEIKKWNAVAL 226
            K  KRFEIKKWNAVAL
Sbjct:   33 KPNKRFEIKKWNAVAL 48

HSP 3 Score: 26.1794 bits (56), Expect = 7.196e-18
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 1

Query:   79 MASLDTDVTM----VPAGEGSSDAPPS 147
            M++++TD+       PAGEGSS A PS
Sbjct:    1 MSAMETDINAPPPPAPAGEGSSAAGPS 27

[Close]

BLAST of DW043138 vs. TrEMBL
Match: B4FD56|B4FD56_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.649e-17
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   34 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 67

HSP 2 Score: 35.039 bits (79), Expect = 1.649e-17
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2

Query:  179 KKAKRFEIKKWNAVAL 226
            KKAKRFEIKKWNAV+L
Sbjct:   18 KKAKRFEIKKWNAVSL 33

HSP 3 Score: 21.557 bits (44), Expect = 1.649e-17
Identity = 17/43 (39.53%), Postives = 20/43 (46.51%), Query Frame = 1

Query:  331 ECTVARGVCQ-----PCIPTLSPAITPLASRPR*VCPPLDNNE 444
            ECTVA G+C       CI            + R VC PLDN+E
Sbjct:   68 ECTVAWGICNHAFHFHCISRW--------LKTRQVC-PLDNSE 101

[Close]

BLAST of DW043138 vs. TrEMBL
Match: C0P5V1|C0P5V1_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.041e-17
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   48 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 81

HSP 2 Score: 31.5722 bits (70), Expect = 2.041e-17
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 2

Query:  179 KKAKRFEIKKWNAVAL 226
            K  KRFEIKKWNAVAL
Sbjct:   32 KPNKRFEIKKWNAVAL 47

HSP 3 Score: 24.6386 bits (52), Expect = 2.041e-17
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 1

Query:   79 MASLDTDVTM---VPAGEGSSDAPPS 147
            M++++TD+      PAGEGSS   PS
Sbjct:    1 MSAMETDINAPPPAPAGEGSSVVGPS 26

[Close]

BLAST of DW043138 vs. TrEMBL
Match: B4FV30|B4FV30_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.041e-17
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   48 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 81

HSP 2 Score: 31.5722 bits (70), Expect = 2.041e-17
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 2

Query:  179 KKAKRFEIKKWNAVAL 226
            K  KRFEIKKWNAVAL
Sbjct:   32 KPNKRFEIKKWNAVAL 47

HSP 3 Score: 24.6386 bits (52), Expect = 2.041e-17
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 1

Query:   79 MASLDTDVTM---VPAGEGSSDAPPS 147
            M++++TD+      PAGEGSS   PS
Sbjct:    1 MSAMETDINAPPPAPAGEGSSVVGPS 26

[Close]

BLAST of DW043138 vs. TrEMBL
Match: C3SA59|C3SA59_BRADI (Ring box protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.137e-17
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   41 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 74

HSP 2 Score: 34.2686 bits (77), Expect = 2.137e-17
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2

Query:  179 KKAKRFEIKKWNAVAL 226
            KK KRFE+KKWNAVAL
Sbjct:   25 KKGKRFEVKKWNAVAL 40

HSP 3 Score: 21.9422 bits (45), Expect = 2.137e-17
Identity = 18/43 (41.86%), Postives = 20/43 (46.51%), Query Frame = 1

Query:  331 ECTVARGVCQ-----PCIPTLSPAITPLASRPR*VCPPLDNNE 444
            ECTVA GVC       CI            + R VC PLDN+E
Sbjct:   75 ECTVAWGVCNHAFHFHCISRW--------LKTRQVC-PLDNSE 108

[Close]

BLAST of DW043138 vs. Vitis vinifera peptide
Match: GSVIVT01015070001 (assembled CDS)

HSP 1 Score: 76.2554 bits (186), Expect = 9.323e-24
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   45 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 78

HSP 2 Score: 35.8094 bits (81), Expect = 9.323e-24
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1

Query:   79 MASLDTDVTMVPAGEGSSDAPPS 147
            MASLD+DVTMVP GE S  A PS
Sbjct:    1 MASLDSDVTMVPVGEPSGSAGPS 23

HSP 3 Score: 34.2686 bits (77), Expect = 9.323e-24
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 2

Query:  179 KKAKRFEIKKWNAVAL 226
            KK KRFEIKKWNAVAL
Sbjct:   29 KKPKRFEIKKWNAVAL 44

[Close]

BLAST of DW043138 vs. Vitis vinifera peptide
Match: GSVIVT01016736001 (assembled CDS)

HSP 1 Score: 66.6254 bits (161), Expect = 9.216e-16
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWD+VVD CAICRNHIM+ CIECQ NQ SATS+
Sbjct:   47 WAWDMVVDTCAICRNHIMEHCIECQANQGSATSN 80

HSP 2 Score: 32.7278 bits (73), Expect = 9.216e-16
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 2

Query:  176 TKKAKRFEIKKWNAVAL 226
            +KK KRFE KKWNAVAL
Sbjct:   30 SKKIKRFETKKWNAVAL 46

[Close]

BLAST of DW043138 vs. TAIR peptide
Match: AT5G20570.2 (| Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | chr5:6956905-6958221 REVERSE LENGTH=142)

HSP 1 Score: 76.2554 bits (186), Expect = 4.764e-23
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   43 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 76

HSP 2 Score: 34.2686 bits (77), Expect = 4.764e-23
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2

Query:  179 KKAKRFEIKKWNAVAL 226
            KKAKRFEIKKW+AVAL
Sbjct:   27 KKAKRFEIKKWSAVAL 42

HSP 3 Score: 33.8834 bits (76), Expect = 4.764e-23
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 1

Query:   79 MASLDTDVTMVPAGEGSSDAPPS 147
            MA+LD+DVTM+PAGE SS    S
Sbjct:    1 MATLDSDVTMIPAGEASSSVAAS 23

[Close]

BLAST of DW043138 vs. TAIR peptide
Match: AT5G20570.3 (| Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | chr5:6956905-6958221 REVERSE LENGTH=136)

HSP 1 Score: 64.6994 bits (156), Expect = 5.274e-20
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 TLSLSWAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            ++ LS    IVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   56 SIGLSMFRYIVVDNCAICRNHIMDLCIECQANQASATSE 94

HSP 2 Score: 35.4242 bits (80), Expect = 5.274e-20
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 2

Query:  179 KKAKRFEIKKWNAVALMGLG 238
            KKAKRFEIKKW+AVAL   G
Sbjct:   27 KKAKRFEIKKWSAVALWAWG 46

HSP 3 Score: 33.8834 bits (76), Expect = 5.274e-20
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 1

Query:   79 MASLDTDVTMVPAGEGSSDAPPS 147
            MA+LD+DVTM+PAGE SS    S
Sbjct:    1 MATLDSDVTMIPAGEASSSVAAS 23

[Close]

BLAST of DW043138 vs. TAIR peptide
Match: AT3G42830.1 (| Symbols: | RING/U-box superfamily protein | chr3:14929714-14930678 REVERSE LENGTH=115)

HSP 1 Score: 73.559 bits (179), Expect = 4.332e-17
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIEC  NQASATS+
Sbjct:   40 WAWDIVVDNCAICRNHIMDLCIECLANQASATSE 73

HSP 2 Score: 30.8018 bits (68), Expect = 4.332e-17
Identity = 12/17 (70.59%), Postives = 16/17 (94.12%), Query Frame = 2

Query:  176 TKKAKRFEIKKWNAVAL 226
            +K +KRFE+KKW+AVAL
Sbjct:   23 SKNSKRFELKKWSAVAL 39

[Close]

BLAST of DW043138 vs. TAIR peptide
Match: AT5G20570.1 (| Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | chr5:6956905-6958221 REVERSE LENGTH=118)

HSP 1 Score: 76.2554 bits (186), Expect = 8.852e-15
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3

Query:  228 WAWDIVVDNCAICRNHIMDLCIECQVNQASATSD 329
            WAWDIVVDNCAICRNHIMDLCIECQ NQASATS+
Sbjct:   43 WAWDIVVDNCAICRNHIMDLCIECQANQASATSE 76

The following BLAST results are available for this feature:

BLAST of DW043138 vs. DB:swissprot:display
BLAST of DW043138 vs. Populus trichocarpa peptide v2.0
BLAST of DW043138 vs. P. persica 1.0 peptide
BLAST of DW043138 vs. TrEMBL
BLAST of DW043138 vs. Vitis vinifera peptide
BLAST of DW043138 vs. TAIR peptide

BLAST of DW043138 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RNF75_MOUSE	2.535e-17	94.12	E3 ubiquitin-protein ligase RBX1 OS=Mus musculus G...	[more]
RBX1_SALSA	2.535e-17	94.12	RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=...	[more]
RBX1_HUMAN	2.535e-17	94.12	E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens G...	[more]
RBX1A_DROME	2.535e-17	94.12	RING-box protein 1A OS=Drosophila melanogaster GN=...	[more]
RBX1B_ARATH	3.861e-16	91.18	RING-box protein 1b OS=Arabidopsis thaliana GN=RBX...	[more]
RBX1_DICDI	3.462e-15	88.24	RING-box protein 1 OS=Dictyostelium discoideum GN=...	[more]
RBX1_CAEEL	4.407e-14	82.35	RING-box protein 1 OS=Caenorhabditis elegans GN=rb...	[more]
RBX1_SCHPO	4.581e-14	81.82	RING-box protein pip1 OS=Schizosaccharomyces pombe...	[more]
RBX1A_ARATH	7.709e-14	94.12	RING-box protein 1a OS=Arabidopsis thaliana GN=RBX...	[more]
RBX1_YEAST	1.092e-10	57.14	RING-box protein HRT1 OS=Saccharomyces cerevisiae ...	[more]

BLAST of DW043138 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
POPTR_0001s16760.1	1.248e-18	94.12		[more]
POPTR_0006s14360.1	1.307e-18	94.12		[more]

BLAST of DW043138 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
ppa013561m	1.437e-19	94.12		[more]
ppa013547m	7.296e-15	94.12		[more]

BLAST of DW043138 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
C6T2R2\|C6T2R2_SOYBN	6.513e-22	94.12	Putative uncharacterized protein OS=Glycine max PE...	[more]
A5ARK4\|A5ARK4_VITVI	1.814e-21	94.12	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9T8A0\|B9T8A0_RICCO	6.782e-21	94.12	Ring finger, putative OS=Ricinus communis GN=RCOM_...	[more]
B9RR99\|B9RR99_RICCO	3.091e-19	94.12	Ring finger, putative OS=Ricinus communis GN=RCOM_...	[more]
A9NMC5\|A9NMC5_PICSI	6.367e-18	94.12	Putative uncharacterized protein OS=Picea sitchens...	[more]
C5XEZ9\|C5XEZ9_SORBI	7.196e-18	94.12	Putative uncharacterized protein Sb03g008660 OS=So...	[more]
B4FD56\|B4FD56_MAIZE	1.649e-17	94.12	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
C0P5V1\|C0P5V1_MAIZE	2.041e-17	94.12	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
B4FV30\|B4FV30_MAIZE	2.041e-17	94.12	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
C3SA59\|C3SA59_BRADI	2.137e-17	94.12	Ring box protein OS=Brachypodium distachyon PE=4 S...	[more]

BLAST of DW043138 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 2


Match Name	E-value	Identity	Description
GSVIVT01015070001	9.323e-24	94.12	assembled CDS	[more]
GSVIVT01016736001	9.216e-16	79.41	assembled CDS	[more]

BLAST of DW043138 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT5G20570.2	4.764e-23	94.12	\| Symbols: ROC1, RBX1, HRT1, ATRBX1 \| RING-box 1 \|...	[more]
AT5G20570.3	5.274e-20	76.92	\| Symbols: ROC1, RBX1, HRT1, ATRBX1 \| RING-box 1 \|...	[more]
AT3G42830.1	4.332e-17	91.18	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]
AT5G20570.1	8.852e-15	94.12	\| Symbols: ROC1, RBX1, HRT1, ATRBX1 \| RING-box 1 \|...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 2..10 score
None	No IPR available	SEG	seg	seg	coord: 16..24 score
None	No IPR available	SEG	seg	seg	coord: 19..32 score
None	No IPR available	PANTHER	PTHR11210	RING FINGER	coord: 36..69 score: 8.6
None	No IPR available	PANTHER	PTHR11210:SF2	RING FINGER 1	coord: 36..69 score: 8.6
None	No IPR available	SEG	seg	seg	coord: 7..22 score
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 36..69 score: 1.5
None	No IPR available	SEG	seg	seg	coord: 36..53 score
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	no description	coord: 34..70 score: 0.0

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DW043138 ID=DW043138; Name=DW043138; organism=Vaccinium corymbosum; type=EST; length=472bp
AAGCGTGGTCGCGGCCGAGGTACGCGGGGATCCACAATCAGAAAACCGTG
CCCTAGCGTTCTGTTTTTGGTTCATTCGATGGCTTCTCTCGACACCGACG
TGACGATGGTTCCCGCCGGTGAAGGTTCAAGCGATGCGCCACCGTCACTC
CTCCAACGCTCCATCGTCCTCCTCTACGAAGAAGGCTAAGCGATTCGAGA
TCAAAAAGTGGAACGCTGTCGCTCTCATGGGCTTGGGATATTGTTGTGGA
CAACTGTGCTATATGTAGGAACCATATAATGGATCTCTGCATAGAGTGTC
AAGTTAACCAAGCTAGTGCTACAAGCGACGGAATGTACTGTTGCTAGGGG
GGTTTGCCAACCCTGCATTCCCACCTTATCCCCTGCCATCACCCCGTTGG
CCTCCAGACCCCGTTAAGTGTGTCCCCCCCTGGATAACAATGAACTGGGG
AATTTCCNAATTATGGCCCTNA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
noIPR	unintegrated
IPR013083	Znf_RING/FYVE/PHD