DW043336

EST Overview
NameDW043336
Unique NameDW043336
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length630
Libraries
Library NameType
LIBEST_018810 Subtracted cDNA library of Vaccinium corymbosumcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide2011-01-25
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
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BLAST of DW043336 vs. TrEMBL
Match: A5BF98|A5BF98_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041009 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 6.019e-7
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = -3 
Query:  284 MGSKAIIFLGLFLATVLLITSEVAAKDLTETST------SAEQTNGVDDAK 418
            MGSKA +FL L  A +LLI+SEVAA+DL ETST      +A +TNGVDDAK
Sbjct:    1 MGSKAFVFLALLWAVLLLISSEVAARDLAETSTEQEKTEAAAKTNGVDDAK 51
[Close]
BLAST of DW043336 vs. TrEMBL
Match: D7TE62|D7TE62_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00030407001 PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 7.861e-7
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = -3 
Query:  284 MGSKAIIFLGLFLATVLLITSEVAAKDLTETSTS------AEQTNGVDDAK 418
            MGSKA +FL L  A +LLI+SEVAA+DL ETST       A +TNGVDDAK
Sbjct:    1 MGSKAFVFLALLWAVLLLISSEVAARDLAETSTEQKKTEVAAKTNGVDDAK 51
[Close]
BLAST of DW043336 vs. Vitis vinifera peptide
Match: GSVIVT01030407001 (assembled CDS)

HSP 1 Score: 57.7658 bits (138), Expect = 3.950e-9
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = -3 
Query:  284 MGSKAIIFLGLFLATVLLITSEVAAKDLTETSTS------AEQTNGVDDAK 418
            MGSKA +FL L  A +LLI+SEVAA+DL ETST       A +TNGVDDAK
Sbjct:    1 MGSKAFVFLALLWAVLLLISSEVAARDLAETSTEQKKTEVAAKTNGVDDAK 51
The following BLAST results are available for this feature:
BLAST of DW043336 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A5BF98|A5BF98_VITVI6.019e-762.75Putative uncharacterized protein OS=Vitis vinifera... [more]
D7TE62|D7TE62_VITVI7.861e-762.75Whole genome shotgun sequence of line PN40024, sca... [more]
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BLAST of DW043336 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010304070013.950e-962.75assembled CDS[more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 2..30
score
NoneNo IPR availableSEGsegsegcoord: 82..106
score
IPR010800Glycine rich proteinPFAMPF07172GRPcoord: 37..105
score: 2

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>DW043336 ID=DW043336; Name=DW043336; organism=Vaccinium corymbosum; type=EST; length=630bp
AGCGTGGTCGCGGCCGAGGTACATGTTTTTACATGGAGCCAAACACTGAT
AAACACAAACCATGCCCTCACAGAAGAACTAGGCCATGGCTCTCAATGTG
AAGGGCATAATCGGATATCATCCATTATTCATACGTACTCTTATAACACG
GTGCACAGATATCATAAATGGCACCTATAAGCTATAACGTTAATTCTCTA
GCTCCTCAATAACCGCCGCCGTATCCACCCCCACGCCCGCCTCCGTATCC
ACCGCCACGCCCGCCTCCATAACCGCCGCCGTACTTGGCGTCATCTACGC
CATTAGTTTGTTCAGCAGAAGTGGAAGTTTCAGTCAAATCCTTAGCTGCT
ACCTCCGAGGTAATGAGAAGAACAGTGGCCAGAAAAAGGCCAAGGAAAAT
AATTGCTTTGGAACCCATTTCTCTCTTCAGTTGATTGGATGAAATTGGAT
GGAATCCCCGCGTACGTGCTTTTACATGGAAACAAAGACTGATAAACACA
CACCATGCCCTCACAGAAGAACCAGGTCATGGCTCTCAATGTGAAGGGCA
TAATTGGATATCATCCATTATCCATACATACTCTTATGACACTTATTAGC
TGTAACATTCATTCGCTTCCTCCTCAATTT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated
IPR010800GRP