DW043570

EST Overview
NameDW043570
Unique NameDW043570
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length642
Libraries
Library NameType
LIBEST_018810 Subtracted cDNA library of Vaccinium corymbosumcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
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BLAST of DW043570 vs. TrEMBL
Match: B2BJD1|B2BJD1_RHOCT (Early light-induced protein 2 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 9.762e-8
Identity = 37/74 (50.00%), Postives = 44/74 (59.46%), Query Frame = 3 
Query:  177 MAASSVMQSILVSPATGVAKPARAVG*KPMSPSCYMPXXXXXXXXXXXCMAKDGQKKEVHPPVM*SQAAKDSTD 398
            MA SSVMQSILVSP TGVAK A     + +  SCY+P           CMAKDG+K+EV  P+  +  AK  TD
Sbjct:    1 MATSSVMQSILVSPVTGVAKGAGLN--RTIPRSCYLPRQGRNSGMLVRCMAKDGRKEEVESPIE-ANVAKVKTD 71
[Close]
BLAST of DW043570 vs. TrEMBL
Match: B2BJD0|B2BJD0_RHOCT (Early light-induced protein 1 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 9.762e-8
Identity = 37/74 (50.00%), Postives = 44/74 (59.46%), Query Frame = 3 
Query:  177 MAASSVMQSILVSPATGVAKPARAVG*KPMSPSCYMPXXXXXXXXXXXCMAKDGQKKEVHPPVM*SQAAKDSTD 398
            MA SSVMQSILVSP TGVAK A     + +  SCY+P           CMAKDG+K+EV  P+  +  AK  TD
Sbjct:    1 MATSSVMQSILVSPVTGVAKGAGLS--RTIPRSCYLPRQGRNSGMLVRCMAKDGRKEEVESPIE-ANVAKVRTD 71
The following BLAST results are available for this feature:
BLAST of DW043570 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
B2BJD1|B2BJD1_RHOCT9.762e-850.00Early light-induced protein 2 OS=Rhododendron cata... [more]
B2BJD0|B2BJD0_RHOCT9.762e-850.00Early light-induced protein 1 OS=Rhododendron cata... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 42..56
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>DW043570 ID=DW043570; Name=DW043570; organism=Vaccinium corymbosum; type=EST; length=642bp
TGCATAAACTCAAAGCATCACAGCAATTAACCCATCACATACAAAGGGCA
TAAGTCCTAGCCAGGTTATAAACGCAATTACAGCCCTTAAGCGTGGTCGC
GGCCGAGGTACTTAACAGCCATAGCCATACACTCAGAAACCCTGTAACTC
AAATCCCTAAGCTTAATACTCTCACAATGGCCGCCTCATCAGTAATGCAG
TCCATACTAGTGAGCCCGGCGACAGGTGTCGCCAAGCCGGCGCGCGCGGT
GGGATAGAAACCGATGTCTCCTAGCTGCTATATGCCACGTCAGCAGAGGA
GCTCTAGCCGGGTAGTGCGGTGCATGGCCAAGGATGGACAGAAGAAGGAA
GTACACCCTCCCGTCATGTAGTCCCAAGCGGCTAAGGACAGCACCGATAT
CTTACGAAGTGTCCGCATATAGTGGGCCGCCACCCGGAGAGATCCAACGG
CCAGACTTGCCCATGGATATGCCTTACGTGGCCCAGCCAATAACCCGTTG
GAAACCTAATAACCCCTTGGGTTCTAGGTATGGTGTTNTACACTCCACAA
AATATCCCCAAACGGGTTGGGGAAATTCCCCGGCTGGGTTTTTTTGTGCC
TTGGCACCCTTCTATTGGGCAAATTGCCCATTCCCNTTCNCC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated