RNA expression in roots of V. arboreum during pH stress

Overview
Analysis NameRNA expression in roots of V. arboreum during pH stress
MethodRNA-SeQC v1.1.8, HTSeq and edgeR
SourcePRJNA353989
Date performed2017-08-07

The study compared gene expression in the roots of V. corymbosum and V. arboreum under pH 4.5 and 6.5.  Reads were mapped to the V. corymbosum genome and differential expression values were calculated.  See Paya-Milans et al. 2017 for more details.   Information about the V. corymbosum data is found on the corresponding analysis page.

Sample NCBI Biomaterial accession NCBI SRA accession
VA6.5_1 SAMN06036197 SRX2360404
VA6.5_2 SAMN06036197 SRX2360412
VA6.5_3 SAMN06036197 SRX2360408
VA6.5_4 SAMN06036197 SRX2360411
VA4.5_5 SAMN06036196 SRX2360403
VA4.5_6 SAMN06036196 SRX2360405
VA4.5_7 SAMN06036196 SRX2360409
VA4.5_8 SAMN06036196 SRX2360402
Properties
Additional information about this analysis:
Property NameValue
Analysis expression organism id69
Analysis expression associated analysis id42
Analysis expression biosourceprovider id
Analysis expression arraydesign id
Analysis expression assaydate2018-4-30 00:00:00
Analysis expression assay description
Analysis expression acquisitiondate2018-4-30 00:00:00
Analysis expression acquisition uri
Analysis expression quantificationdate2018-4-30 00:00:00
Analysis expression quantification uri
Analysis expression assay protocol id0
Analysis expression acquisition protocol id0
Analysis expression quantification protocol id0
Analysis expression assay operator id
Analysis expression quantification operator id
Analysis expression filetypemat
Analysis expression submit job0
Analysis expression fileext
Analysis expression filepath/mainlab/research/vaccinium/VaccRNAseq-FromMeg_Nov2017/Vc_Va_Project/Va_only_ExpValues.txt
Analysis expression re start
Analysis expression re end
Analysis expression feature uniquenamesname