|
|
Overview
| Analysis Name | Expression: Roots of V. arboreum during pH stress |
|---|
| Method | RNA-SeQC v1.1.8, HTSeq and edgeR |
|---|
| Source | PRJNA353989 |
|---|
| Date performed | 2017-08-07 |
|---|
The study compared gene expression in the roots of V. corymbosum and V. arboreum under pH 4.5 and 6.5. Reads were mapped to the V. corymbosum genome and differential expression values were calculated. See Paya-Milans et al. 2017 for more details. Information about the V. corymbosum data is found on the corresponding analysis page. Expression values are in normalized counts.
| Sample |
Tissue |
Treatment |
| VA6.5_1 |
Root |
pH 6.5 |
| VA6.5_2 |
Root |
pH 6.5 |
| VA6.5_3 |
Root |
pH 6.5 |
| VA6.5_4 |
Root |
pH 6.5 |
| VA4.5_5 |
Root |
pH 4.5 |
| VA4.5_6 |
Root |
pH 4.5 |
| VA4.5_7 |
Root |
pH 4.5 |
| VA4.5_8 |
Root |
pH 4.5 |
Properties
Additional information about this analysis:
| Property Name | Value |
|---|
| Analysis expression organism id | 69 |
| Analysis expression associated analysis id | 42 |
| Analysis expression biosourceprovider id | |
| Analysis expression arraydesign id | |
| Analysis expression assaydate | 2018-4-30 00:00:00 |
| Analysis expression assay description | |
| Analysis expression acquisitiondate | 2018-4-30 00:00:00 |
| Analysis expression acquisition uri | |
| Analysis expression quantificationdate | 2018-4-30 00:00:00 |
| Analysis expression quantification uri | |
| Analysis expression assay protocol id | 0 |
| Analysis expression acquisition protocol id | 0 |
| Analysis expression quantification protocol id | 0 |
| Analysis expression assay operator id | |
| Analysis expression quantification operator id | |
| Analysis expression filetype | mat |
| Analysis expression submit job | 0 |
| Analysis expression fileext | |
| Analysis expression filepath | /mainlab/research/vaccinium/VaccRNAseq-FromMeg_Nov2017/Vc_Va_Project/Va_only_ExpValues.txt |
| Analysis expression re start | |
| Analysis expression re end | |
| Analysis expression feature uniquenames | name |
|
