RNA expression in roots of V. corymbosum during pH stress

Overview
Analysis NameRNA expression in roots of V. corymbosum during pH stress
MethodRNA-SeQC v1.1.8, HTSeq, edgeR
SourcePRJNA353989
Date performed2017-08-07

The study compared gene expression in the roots of V. corymbosum and V. arboreum under pH 4.5 and 6.5.  Reads were mapped to the V. corymbosum genome and differential expression values were calculated.   See Paya-Milans et al. 2017 for more details.  Information about the V. arboreum data is found on the corresponding analysis page.

Sample NCBI Biomaterial accession NCBI SRA accession
VC6.5_9 SAMN06036203 SRX2360413
VC6.5_10 SAMN06036203 SRX2360406
VC6.5_11 SAMN06036203 SRX2360399
VC6.5_12 SAMN06036203 SRX2360407
VC4.5_13 SAMN06036200 SRX2360410
VC4.5_14 SAMN06036200 SRX2360398
VC4.5_15 SAMN06036200 SRX2360401
VC4.5_16 SAMN06036200 SRX2360400
Properties
Additional information about this analysis:
Property NameValue
Analysis expression organism id13
Analysis expression associated analysis id42
Analysis expression biosourceprovider id
Analysis expression arraydesign id
Analysis expression assaydate2018-4-30 00:00:00
Analysis expression assay description
Analysis expression acquisitiondate2018-4-30 00:00:00
Analysis expression acquisition uri
Analysis expression quantificationdate2018-4-30 00:00:00
Analysis expression quantification uri
Analysis expression assay protocol id0
Analysis expression acquisition protocol id0
Analysis expression quantification protocol id0
Analysis expression assay operator id
Analysis expression quantification operator id
Analysis expression filetypemat
Analysis expression submit job0
Analysis expression fileext
Analysis expression filepath/mainlab/research/vaccinium/VaccRNAseq-FromMeg_Nov2017/Vc_Va_Project/Vc_only_expValues-renamed.txt
Analysis expression re start
Analysis expression re end
Analysis expression feature uniquenamesname