vm07778, vm07778 (genetic_marker) Vaccinium macrocarpon | GDV

Marker Overview

Marker Overview


Name	vm07778
Genbank ID	N/A
Type	SSR
Species	Vaccinium macrocarpon
Repeat Motif	(AG)9
Primer 1	vm07778.forward primer: ATATACGTACACTCACGCACAC
Primer 2	vm07778.reverse primer: GTTAGGTGCATAATAACGGTTG
Product Length	181
Max Length	184
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vmac_chr05	supercontig	Vmac_chr05:5963716..5963871 .	Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequence	GDV marker alignment to genome using primer sequences
chr5	supercontig	chr5:26609352..26609507 .	Vaccinium macrocarpon cv. Stevens v1.0 genome sequence	GDV marker alignment to genome using primer sequences

Publications


Year	Publication
2012	Zhu H, Senalik D, McCown BH, Zeldin EL, Speers J, Hyman J, Bassil N, Hummer K, Simon PW, Zalapa JE. Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2012 Jan; 124(1):87-96.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Cranberry-CNJ02-1-2007	LG5	N/A	85.19	vm07778	View
2	Cranberry-Mullica_Queen-2007	LG5	N/A	92.5	vm07778	View
3	Cranberry-CNJ02-1-2017	LG05	N/A	74.7	vm07778	View
4	Cranberry-Mullica_Queen-2017	LG05	N/A	79.5	vm07778	View
5	Cranberry-Composite_map-F1	LG05	N/A	75.97	vm07778	View
6	Cranberry-Mullica_Queen_1-F1	LG05	N/A	87.11	vm07778	View