vm48827, vm48827 (genetic_marker) Vaccinium macrocarpon | GDV

Marker Overview

Marker Overview


Name	vm48827
Genbank ID	N/A
Type	SSR
Species	Vaccinium macrocarpon
Repeat Motif	(AGT)6
Primer 1	vm48827.forward primer: CTTAGCACACTTGATGGAGTC
Primer 2	vm48827.reverse primer: GGAACGGGCTATAAGAATGTA
Product Length	247
Max Length	254
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
VaccDscaff1	supercontig	VaccDscaff1:14789928..14790147 .	Vaccinium corymbosum cv. Draper v1.0 genome sequence	GDV marker alignment to genome using primer sequences
scaffold00663	supercontig	scaffold00663:123371..123589 .	Vaccinium corymbosum W8520 draft genome sequence	GDV marker alignment to genome using primer sequences
chr1_H1	supercontig	chr1_H1:16158041..16158254 .	Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence	GDV marker alignment to genome using primer sequences
Vmac_chr06	supercontig	Vmac_chr06:11889219..11889439 .	Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequence	GDV marker alignment to genome using primer sequences
chr6	supercontig	chr6:27399589..27399809 .	Vaccinium macrocarpon cv. Stevens v1.0 genome sequence	GDV marker alignment to genome using primer sequences
Chr01_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr01_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:32618532..32618784 .	Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genome	GDV marker alignment to genome using primer sequences

Publications


Year	Publication
2012	Zhu H, Senalik D, McCown BH, Zeldin EL, Speers J, Hyman J, Bassil N, Hummer K, Simon PW, Zalapa JE. Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2012 Jan; 124(1):87-96.