vm54153, vm54153 (genetic_marker) Vaccinium macrocarpon | GDV

Marker Overview

Marker Overview


Name	vm54153
Genbank ID	N/A
Type	SSR
Species	Vaccinium macrocarpon
Repeat Motif	(GAA)9
Primer 1	vm54153.forward primer: GATATTTCCAGCTTCTCCCT
Primer 2	vm54153.reverse primer: GCTATAGTGTCATTCGAGTCTG
Product Length	138
Max Length	144
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr03_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr03_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:2444117..2444225 .	Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genome	GDV marker alignment to genome using primer sequences
scaffold00237	supercontig	scaffold00237:84019..84142 .	Vaccinium corymbosum W8520 draft genome sequence	GDV marker alignment to genome using primer sequences
Vmac_chr04	supercontig	Vmac_chr04:34383494..34383611 .	Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequence	GDV marker alignment to genome using primer sequences
chr4	supercontig	chr4:1482872..1482989 .	Vaccinium macrocarpon cv. Stevens v1.0 genome sequence	GDV marker alignment to genome using primer sequences
Chr03	supercontig	Chr03:2195466..2195571 .	Vaccinium myrtillus isolate NK2018 v1.0 genome sequence	GDV marker alignment to genome using primer sequences
Chr03_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr03_Vaccinium_vitis-idaea_ssp_minus:2189598..2189706 .	Vaccinium vitis-idaea ssp. minus v1.0 genome	GDV marker alignment to genome using primer sequences

Publications


Year	Publication
2012	Zhu H, Senalik D, McCown BH, Zeldin EL, Speers J, Hyman J, Bassil N, Hummer K, Simon PW, Zalapa JE. Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2012 Jan; 124(1):87-96.