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Mo009
Marker Overview
Alignments
Contact
Publications
Marker Overview
Name
Mo009
Genbank ID
N/A
Type
SSR
Species
Vaccinium floribundum
Repeat Motif
(AGT)24
Primer 1
Mo009.Forward: TATTCTTATGTTCGTCCTCGTAGGC
Primer 2
Mo009.Reverse: TTTCCTGCTAGCTGTTGTTGTAACG
Publication
[
view all
]
Contact
Maria de Lourdes Torres
Contact
Name
Details
Maria de Lourdes Torres
First name:
Maria
Last name:
de Lourdes Torres
Institution:
Universidad San Francisco de Quito
Country:
Ecuador
Email:
ltorres@usfq.edu.ec
Last update:
Dec 2020
Alignments
The following features are aligned
Feature Name
Type
Location
Analysis
Reference
Vcev1_p0.Chr12
supercontig
Vcev1_p0.Chr12:10841366..10841742 .
Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence
GDV marker alignment to genome using primer sequences
VaccDscaff17
supercontig
VaccDscaff17:25979951..25980325 .
Vaccinium corymbosum cv. Draper v1.0 genome sequence
GDV marker alignment to genome using primer sequences
scaffold00350
supercontig
scaffold00350:33826..34202 .
Vaccinium corymbosum W8520 draft genome sequence
GDV marker alignment to genome using primer sequences
chr12_H1
supercontig
chr12_H1:9230401..9230780 .
Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence
GDV marker alignment to genome using primer sequences
Vmac_chr07
supercontig
Vmac_chr07:7972633..7973027 .
Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequence
GDV marker alignment to genome using primer sequences
chr7
supercontig
chr7:7420011..7420411 .
Vaccinium macrocarpon cv. Stevens v1.0 genome sequence
GDV marker alignment to genome using primer sequences
Chr12
supercontig
Chr12:7824795..7825166 .
Vaccinium myrtillus isolate NK2018 v1.0 genome sequence
GDV marker alignment to genome using primer sequences
Chr12_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1
chromosome
Chr12_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:8768875..8769249 .
Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genome
GDV marker alignment to genome using primer sequences
Chr12_Vaccinium_vitis-idaea_ssp_minus
chromosome
Chr12_Vaccinium_vitis-idaea_ssp_minus:8222410..8222786 .
Vaccinium vitis-idaea ssp. minus v1.0 genome
GDV marker alignment to genome using primer sequences
Publications
Year
Publication
2020
Vega-Polo P, Cobo MM, Argudo A, Gutierrez B, Rowntree J, Torres ML. Characterizing the genetic diversity of the Andean blueberry (Vaccinium floribundum Kunth.) across the Ecuadorian Highlands.. PloS one. 2020; 15(12):e0243420.
