Skip to main content
Toggle navigation
Crop
Blueberry
Cranberry
Bilberry
Lingonberry
others
Data
Data Download
Data Submission
Data Overview
Marker Types
Trait Abbreviations
BIMS and Field Book
Publication Datasets
Vaccinium Pangenome
Crop Ontology Information
Search
Gene and Transcript Search
Germplasm Search
Map Search
Marker Search
Marker Search by Locus
Publication Search
QTL/GWAS Search
Sequence Search
MegaSearch
Ortholog/Paralog Search
Trait Descriptor Search
Trait Search
Fruit and Nut List
Tools
BIMS
BLAST+
Expression Heatmap
JBrowse
MapViewer
Pangenome Graph Viewer
PathwayCyc
Synteny Viewer
General
About
GDV Usage
Disclaimer
Conferences
Presentations
GDV Citations
Mailing List
News Archives
Work Completed
Work in Progress
GDV Email Archive
Newsletter
VacCAP
VacCAP website
Project Description
VacCAP Team
Contact VacCAP
VacCAP Mailing List
Help
Contact
User Manual
Video Tutorials
Search form
Search
Login
Mo021
Marker Overview
Alignments
Contact
Publications
Marker Overview
Name
Mo021
Genbank ID
N/A
Type
SSR
Species
Vaccinium floribundum
Repeat Motif
(TTC)33
Primer 1
Mo021.Forward: CATGGTTTGGTCTAGTTGATAACCC
Primer 2
Mo021.Reverse: GATGCTTCCTAGAGCCTTTATTGC
Publication
[
view all
]
Contact
Maria de Lourdes Torres
Contact
Name
Details
Maria de Lourdes Torres
First name:
Maria
Last name:
de Lourdes Torres
Institution:
Universidad San Francisco de Quito
Country:
Ecuador
Email:
ltorres@usfq.edu.ec
Last update:
Dec 2020
Alignments
The following features are aligned
Feature Name
Type
Location
Analysis
Reference
VaccDscaff25
supercontig
VaccDscaff25:9691510..9691805 .
Vaccinium corymbosum cv. Draper v1.0 genome sequence
GDV marker alignment to genome using primer sequences
Vmac_chr01
supercontig
Vmac_chr01:9589860..9590204 .
Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequence
GDV marker alignment to genome using primer sequences
chr1
supercontig
chr1:39057014..39057358 .
Vaccinium macrocarpon cv. Stevens v1.0 genome sequence
GDV marker alignment to genome using primer sequences
Chr02
supercontig
Chr02:9676776..9677096 .
Vaccinium myrtillus isolate NK2018 v1.0 genome sequence
GDV marker alignment to genome using primer sequences
Chr02_Vaccinium_vitis-idaea_ssp_minus
chromosome
Chr02_Vaccinium_vitis-idaea_ssp_minus:11252166..11252476 .
Vaccinium vitis-idaea ssp. minus v1.0 genome
GDV marker alignment to genome using primer sequences
Publications
Year
Publication
2020
Vega-Polo P, Cobo MM, Argudo A, Gutierrez B, Rowntree J, Torres ML. Characterizing the genetic diversity of the Andean blueberry (Vaccinium floribundum Kunth.) across the Ecuadorian Highlands.. PloS one. 2020; 15(12):e0243420.