Fruit length, qFLEN.GRYG.LG08.15 (QTL) Vaccinium macrocarpon

QTL Overview


QTL Label	qFLEN.GRYG.LG08.15
Published Symbol	len-15-chr8-cM50.16
Trait Name	Fruit length
Trait Alias	N/A
Trait Study	Cranberry-Fruit_shape-Zalapa-2018
Population	N/A
Female Parent	N/A
Male Parent	N/A
Colocalizing Marker	scaffold_37461_3262 SCF8850 scaffold_34700_1827
Neighboring Marker	N/A
Environment	N/A
LOD	11.08
Additivity Dominance Ratio	N/A
R2	0.03
Comments	N/A

Publications


Year	Publication
2018	Diaz-Garcia L, Covarrubias-Pazaran G, Schlautman B, Grygleski E, Zalapa J. Image-based phenotyping for identification of QTL determining fruit shape and size in American cranberry (Vaccinium macrocarpon L.). PeerJ. 2018; 6:e5461.

Map Positions


#	Map Name	Linkage Group	Bin	Chromosome	Peak	Span Start	Span Stop	MapViewer
1	Cranberry-Composite_map-F1	LG08	N/A	N/A	50	-	-	View

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	supercontig	chr8:10363222..10363545 .
Vmac_chr08	supercontig	Vmac_chr08:10737858..10738174 .

Sequences

The following sequences are available for this feature:

QTL from alignment at chr8:10363222..10363545
QTL from alignment at Vmac_chr08:10737858..10738174

QTL from alignment at chr8:10363222..10363545

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qFLEN.GRYG.LG08.15 ID=qFLEN.GRYG.LG08.15; Name=Fruit length; organism=Vaccinium macrocarpon; type=QTL; length=324bp; location=Sequence derived from: chr8:10363222..10363545 (Vaccinium macrocarpon
GTGTGATGTATTTAAGGAGTACCACTCTTTTTTCTTTTTTTTTTAAGAAA
TGCTCGAAGTACTTAAGAATACAAAGTTTTTGAAATGTTATTTCATTGTT
TTTTGGTAAAGTTACTTTTTATATTTGGTGATATATTATGATAGCATGTA
GACTATATTCAAGAGATTGCAAGTGCTTTATGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGGACGGAGATCGAAAACGTGATTGGTTAAAAATGAAGTCGA
ATATGGTAGATTGTAATTGAAGATCCATGGTTTAGTACTGTGAGATTATT
TCCCTTGGTAACTACTCTATCTGT

QTL from alignment at Vmac_chr08:10737858..10738174

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qFLEN.GRYG.LG08.15 ID=qFLEN.GRYG.LG08.15; Name=Fruit length; organism=Vaccinium macrocarpon; type=QTL; length=317bp; location=Sequence derived from: Vmac_chr08:10737858..10738174 (Vaccinium macrocarpon
GTGTGATGTATTTAAGGAGTACCACTCTTTTTTCTTTTTTTTTTAAGAAA
AACTCGAAGTACTTAAGAATACAAAGTTTTTGAAATGTTATTTCATTGTT
TTTTGGTAAAGTTACTTTTTTATATTTGGTGATATATTATGATAGCATGT
GGACTATATTCAAGAGATTGCAAGTGCTTTATGAGAGAGAGAGAGAGAGA
GAAGACGGAGATCAAAAACGTGATTGGTTAAAAATGAAGTCGAATATGGT
AGATTGTAATTGAAGATCCATGGTTTAGTACTATGAGATTATTTCCCTTG
GTAACTACTCTATCTGT