KAN16025, KAN16025 (genetic_marker) Vaccinium corymbosum | GDV

Marker Overview

Marker Overview


Name	KAN16025
Genbank ID	N/A
Type	SSR
Species	Vaccinium corymbosum
Repeat Motif	(GA)10
Primer 1	KAN16025.forward primer: TCAAAGGCAGAGAGGAGAGC
Primer 2	KAN16025.reverse primer: GACTTTCTGCAACAGGCACA
Max Length	282
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vcev1_p0.Chr10	supercontig	Vcev1_p0.Chr10:3922157..3922409 .	Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence	GDV marker alignment to genome using primer sequences
scaffold00050	supercontig	scaffold00050:244276..244534 .	Vaccinium corymbosum W8520 draft genome sequence	GDV marker alignment to genome using primer sequences
chr10_H1	supercontig	chr10_H1:3032835..3033085 .	Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence	GDV marker alignment to genome using primer sequences
Chr10_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr10_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:37182962..37183182 .	Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genome	GDV marker alignment to genome using primer sequences
Chr10_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr10_Vaccinium_vitis-idaea_ssp_minus:33991080..33991295 .	Vaccinium vitis-idaea ssp. minus v1.0 genome	GDV marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Bian Y, Ballington J, Raja A, Brouwer C, Reid R, Burke M, Wang X, Rowland LJ, Bassil N, Brown A. Patterns of simple sequence repeats in cultivated blueberries (Vaccinium section Cyanococcus spp.) and their use in revealing genetic diversity and population structure. Molecular breeding. 2014; 34(2):675-689.