KAN24499, KAN24499 (genetic_marker) Vaccinium corymbosum | GDV

Marker Overview

Marker Overview


Name	KAN24499
Genbank ID	N/A
Type	SSR
Species	Vaccinium corymbosum
Repeat Motif	(GA)8
Primer 1	KAN24499.forward primer: GAAATGATTCTGTGGGTGGG
Primer 2	KAN24499.reverse primer: GTTGGAGCCTTTGGACTCTG
Max Length	202
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vcev1_p0.Chr08	supercontig	Vcev1_p0.Chr08:33977894..33978053 .	Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence	GDV marker alignment to genome using primer sequences
scaffold00720	supercontig	scaffold00720:145279..145442 .	Vaccinium corymbosum W8520 draft genome sequence	GDV marker alignment to genome using primer sequences
chr8_H1	supercontig	chr8_H1:26490748..26490911 .	Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence	GDV marker alignment to genome using primer sequences
Chr08_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr08_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:26795777..26795934 .	Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genome	GDV marker alignment to genome using primer sequences
Chr08_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr08_Vaccinium_vitis-idaea_ssp_minus:26042847..26043004 .	Vaccinium vitis-idaea ssp. minus v1.0 genome	GDV marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Bian Y, Ballington J, Raja A, Brouwer C, Reid R, Burke M, Wang X, Rowland LJ, Bassil N, Brown A. Patterns of simple sequence repeats in cultivated blueberries (Vaccinium section Cyanococcus spp.) and their use in revealing genetic diversity and population structure. Molecular breeding. 2014; 34(2):675-689.