KAN29223, KAN29223 (genetic_marker) Vaccinium corymbosum | GDV

Marker Overview

Marker Overview


Name	KAN29223
Genbank ID	N/A
Type	SSR
Species	Vaccinium corymbosum
Repeat Motif	(CT)11
Primer 1	KAN29223.forward primer: TGCCAGGATGTAAGCATGAA
Primer 2	KAN29223.reverse primer: ACCAAGCCAACGTACTGAGG
Max Length	246
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vcev1_p0.Chr08	supercontig	Vcev1_p0.Chr08:34516791..34517016 .	Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence	GDV marker alignment to genome using primer sequences
VaccDscaff30	supercontig	VaccDscaff30:16243469..16243686 .	Vaccinium corymbosum cv. Draper v1.0 genome sequence	GDV marker alignment to genome using primer sequences
scaffold01438	supercontig	scaffold01438:79376..79823 .	Vaccinium corymbosum W8520 draft genome sequence	GDV marker alignment to genome using primer sequences
Chr08	supercontig	Chr08:24204630..24204849 .	Vaccinium myrtillus isolate NK2018 v1.0 genome sequence	GDV marker alignment to genome using primer sequences
Chr08_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr08_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:27263431..27263653 .	Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genome	GDV marker alignment to genome using primer sequences
Chr08_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr08_Vaccinium_vitis-idaea_ssp_minus:26521080..26521308 .	Vaccinium vitis-idaea ssp. minus v1.0 genome	GDV marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Bian Y, Ballington J, Raja A, Brouwer C, Reid R, Burke M, Wang X, Rowland LJ, Bassil N, Brown A. Patterns of simple sequence repeats in cultivated blueberries (Vaccinium section Cyanococcus spp.) and their use in revealing genetic diversity and population structure. Molecular breeding. 2014; 34(2):675-689.