KAN41409, KAN41409 (genetic_marker) Vaccinium corymbosum | GDV

Marker Overview

Marker Overview


Name	KAN41409
Genbank ID	N/A
Type	SSR
Species	Vaccinium corymbosum
Repeat Motif	(TC)12
Primer 1	KAN41409.forward primer: TCCTTCTTGCAACGTCCTCT
Primer 2	KAN41409.reverse primer: GTTCGTCTTGGACTTCGAGC
Max Length	279
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vcev1_p0.Chr09	supercontig	Vcev1_p0.Chr09:44864030..44864278 .	Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence	GDV marker alignment to genome using primer sequences
chr9_H1	supercontig	chr9_H1:36639991..36640254 .	Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence	GDV marker alignment to genome using primer sequences
chr5	supercontig	chr5:5686123..5686352 .	Vaccinium macrocarpon cv. Stevens v1.0 genome sequence	GDV marker alignment to genome using primer sequences
Chr09	supercontig	Chr09:7126682..7126931 .	Vaccinium myrtillus isolate NK2018 v1.0 genome sequence	GDV marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Bian Y, Ballington J, Raja A, Brouwer C, Reid R, Burke M, Wang X, Rowland LJ, Bassil N, Brown A. Patterns of simple sequence repeats in cultivated blueberries (Vaccinium section Cyanococcus spp.) and their use in revealing genetic diversity and population structure. Molecular breeding. 2014; 34(2):675-689.