VCBC00847, VCBC00847 (genetic_marker) Vaccinium corymbosum | GDV

Marker Overview

Marker Overview


Name	VCBC00847
Genbank ID	N/A
Type	EST-SSR
Species	Vaccinium corymbosum
Repeat Motif	(ag)8
Primer 1	VCBC00847.forward primer: AAGCTTAGTTGCCAGTGTGTGA
Primer 2	VCBC00847.reverse primer: CGGGCTTCTTTGTACGAATACT
Product Length	200
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vcev1_p0.Chr12	supercontig	Vcev1_p0.Chr12:38040700..38040900 .	Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence	GDV marker alignment to genome using primer sequences
scaffold00063	supercontig	scaffold00063:245754..245954 .	Vaccinium corymbosum W8520 draft genome sequence	GDV marker alignment to genome using primer sequences
chr12_H1	supercontig	chr12_H1:30963991..30964200 .	Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence	GDV marker alignment to genome using primer sequences
Chr12	supercontig	Chr12:26666621..26666806 .	Vaccinium myrtillus isolate NK2018 v1.0 genome sequence	GDV marker alignment to genome using primer sequences
Chr12_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr12_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:30868242..30868433 .	Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genome	GDV marker alignment to genome using primer sequences
Chr12_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr12_Vaccinium_vitis-idaea_ssp_minus:30052645..30052838 .	Vaccinium vitis-idaea ssp. minus v1.0 genome	GDV marker alignment to genome using primer sequences

Publications


Year	Publication
2012	Rowland LJ, Alkharouf N, Darwish O, Ogden EL, Polashock JJ, Bassil NV, Main D. Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation. BMC plant biology. 2012; 12:46.