VCBC01424, VCBC01424 (genetic_marker) Vaccinium corymbosum | GDV

Marker Overview

Marker Overview


Name	VCBC01424
Genbank ID	N/A
Type	EST-SSR
Species	Vaccinium corymbosum
Repeat Motif	(tcaa)3
Primer 1	VCBC01424.forward primer: CCATAGAGTGCCTACCCCAGTA
Primer 2	VCBC01424.reverse primer: ATTGAAGAAGCCTCTGACAAGC
Max Length	233
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold00020	supercontig	scaffold00020:377187..377378 .	Vaccinium corymbosum W8520 draft genome sequence	GDV marker alignment to genome using primer sequences
chr9_H1	supercontig	chr9_H1:40385636..40385843 .	Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence	GDV marker alignment to genome using primer sequences
Chr09	supercontig	Chr09:3442294..3442493 .	Vaccinium myrtillus isolate NK2018 v1.0 genome sequence	GDV marker alignment to genome using primer sequences
Chr09_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr09_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:4429360..4429554 .	Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genome	GDV marker alignment to genome using primer sequences
Chr09_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr09_Vaccinium_vitis-idaea_ssp_minus:4156426..4156620 .	Vaccinium vitis-idaea ssp. minus v1.0 genome	GDV marker alignment to genome using primer sequences

Publications


Year	Publication
2012	Rowland LJ, Alkharouf N, Darwish O, Ogden EL, Polashock JJ, Bassil NV, Main D. Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation. BMC plant biology. 2012; 12:46.