GW397257
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_PIG (Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.115e-9 Identity = 25/40 (62.50%), Postives = 37/40 (92.50%), Query Frame = -2 Query: 13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132 KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++R++G II Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_MOUSE (Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.115e-9 Identity = 25/40 (62.50%), Postives = 37/40 (92.50%), Query Frame = -2 Query: 13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132 KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++R++G II Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_HUMAN (Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.115e-9 Identity = 25/40 (62.50%), Postives = 37/40 (92.50%), Query Frame = -2 Query: 13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132 KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++R++G II Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_CHICK (Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.115e-9 Identity = 25/40 (62.50%), Postives = 37/40 (92.50%), Query Frame = -2 Query: 13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132 KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++R++G II Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_BOVIN (Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.115e-9 Identity = 25/40 (62.50%), Postives = 37/40 (92.50%), Query Frame = -2 Query: 13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132 KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++R++G II Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_DANRE (Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=2 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 4.237e-9 Identity = 24/40 (60.00%), Postives = 36/40 (90.00%), Query Frame = -2 Query: 13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132 KVQ++M QPINLIFR+LQ+++RI +WL+EQ ++R++G II Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCII 48
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_DROME (Probable small nuclear ribonucleoprotein E OS=Drosophila melanogaster GN=CG18591 PE=1 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 7.227e-9 Identity = 23/40 (57.50%), Postives = 35/40 (87.50%), Query Frame = -2 Query: 13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132 KVQ++M QPINLIFR+LQ+++R+Q+WL+E LR++G I+ Sbjct: 8 KVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIV 47
BLAST of GW397257 vs. DB:swissprot:display
Match: RUEL1_HUMAN (Putative small nuclear ribonucleoprotein polypeptide E-like protein 1 OS=Homo sapiens GN=SNRPEL1 PE=5 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 9.439e-9 Identity = 23/40 (57.50%), Postives = 37/40 (92.50%), Query Frame = -2 Query: 13 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 132 KVQ++M QPINLIFR+LQ++++IQ+WL+EQ +++++G II Sbjct: 9 KVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMQIEGCII 48
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_CAEBR (Probable small nuclear ribonucleoprotein E OS=Caenorhabditis briggsae GN=snr-6 PE=3 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.610e-8 Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 M+ K+Q++M QP+NLIFR+LQ++ R+QIWL+E RL+G II Sbjct: 1 MSQRKIQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYII 44
BLAST of GW397257 vs. DB:swissprot:display
Match: RUXE_CAEEL (Probable small nuclear ribonucleoprotein E OS=Caenorhabditis elegans GN=snr-6 PE=1 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 2.103e-8 Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 M+T K+ ++M QP+NLIFR+LQ++ R+QIWL+E RL+G II Sbjct: 1 MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYII 44
BLAST of GW397257 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0018s10540.1 () HSP 1 Score: 82.8037 bits (203), Expect = 5.541e-17 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. P. persica 1.0 peptide
Match: ppa014076m () HSP 1 Score: 82.8037 bits (203), Expect = 3.772e-17 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. P. persica 1.0 peptide
Match: ppa014077m () HSP 1 Score: 82.8037 bits (203), Expect = 3.772e-17 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. P. persica 1.0 peptide
Match: ppa020341m () HSP 1 Score: 73.559 bits (179), Expect = 2.288e-14 Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = -2 Query: 10 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSIID 144 MA+TKV+RIMTQPINLI RFLQ KAR IWLFEQKDLR+ G IID Sbjct: 1 MASTKVKRIMTQPINLISRFLQHKARTHIWLFEQKDLRIKGRIID 45
BLAST of GW397257 vs. TrEMBL
Match: D7SJ02|D7SJ02_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00008301001 PE=4 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.229e-15 Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. TrEMBL
Match: A9NKR7|A9NKR7_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 9.421e-15 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MATT+VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MATTRVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. TrEMBL
Match: Q6Z2M5|Q6Z2M5_ORYSJ (Os02g0126700 protein OS=Oryza sativa subsp. japonica GN=P0482F12.18 PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. TrEMBL
Match: D6BQM6|D6BQM6_9ROSI (Small nuclear ribonucleoprotein polypeptide OS=Jatropha curcas PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. TrEMBL
Match: C5XL26|C5XL26_SORBI (Putative uncharacterized protein Sb03g001950 OS=Sorghum bicolor GN=Sb03g001950 PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. TrEMBL
Match: C4IYX9|C4IYX9_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. TrEMBL
Match: B9T0H9|B9T0H9_RICCO (Small nuclear ribonucleoprotein E, putative OS=Ricinus communis GN=RCOM_0729670 PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. TrEMBL
Match: B8AGZ5|B8AGZ5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05681 PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. TrEMBL
Match: B6UAE3|B6UAE3_MAIZE (Small nuclear ribonucleoprotein E OS=Zea mays PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. TrEMBL
Match: B6TNY9|B6TNY9_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.230e-14 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. Vitis vinifera peptide
Match: GSVIVT01008301001 (assembled CDS) HSP 1 Score: 84.3445 bits (207), Expect = 1.108e-17 Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 13 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSII 144 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G II Sbjct: 1 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
BLAST of GW397257 vs. TAIR peptide
Match: AT4G30330.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr4:14836773-14837919 REVERSE LENGTH=88) HSP 1 Score: 81.2629 bits (199), Expect = 1.379e-16 Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = -2 Query: 16 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSI 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G I Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 43
BLAST of GW397257 vs. TAIR peptide
Match: AT2G18740.2 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:8123334-8124581 FORWARD LENGTH=78) HSP 1 Score: 81.2629 bits (199), Expect = 1.379e-16 Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = -2 Query: 16 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSI 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G I Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 43
BLAST of GW397257 vs. TAIR peptide
Match: AT2G18740.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:8123334-8124710 FORWARD LENGTH=88) HSP 1 Score: 81.2629 bits (199), Expect = 1.379e-16 Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = -2 Query: 16 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRLDGSI 144 MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR++G I Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 43 The following BLAST results are available for this feature:
BLAST of GW397257 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot) Total hits: 10
BLAST of GW397257 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide) Total hits: 1
BLAST of GW397257 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide) Total hits: 3
BLAST of GW397257 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL) Total hits: 10
BLAST of GW397257 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide) Total hits: 1
BLAST of GW397257 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GW397257 ID=GW397257; Name=GW397257; organism=Vaccinium corymbosum; type=EST; length=223bpback to top Annotated Terms
The
following terms have been associated with
this EST:
|