IP5PII-1, IP5PII-1 (genetic_marker) Vaccinium corymbosum | GDV

Marker Overview

Marker Overview


Name	IP5PII-1
Genbank ID	N/A
Type	SSR
Species	Vaccinium corymbosum
Primer 1	IP5PII-1.Forward Primer: GATTCGAACGGCAGTATAAACC
Primer 2	IP5PII-1.Reverse Primer: GCCCTTATCAATCTCCAAATGA
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vcev1_p0.Chr02	supercontig	Vcev1_p0.Chr02:8731045..8731266 .	Vaccinium caesariense clone W85-20 P0 v2.0 genome sequence	GDV marker alignment to genome using primer sequences
scaffold00661	supercontig	scaffold00661:106707..106928 .	Vaccinium corymbosum W8520 draft genome sequence	GDV marker alignment to genome using primer sequences
chr2_H1	supercontig	chr2_H1:7115846..7116067 .	Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence	GDV marker alignment to genome using primer sequences

Publications


Year	Publication
2016	McCallum S, Graham J, Jorgensen L, Rowland L, Bassil N, Hancock J, Wheeler E, Vining K, Poland J, Olmstead J, Buck E, Wiedow C, Jaclson E, Allan B, Hackett C. Construction of a SNP and SSR linkage map in autotetraploid blueberry using genotyping by sequencing. Molecular Breeding. 2016; 36(41):1-24.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Blueberry-Draper	LG4	N/A	59	IP5PII-1c	View