VCBC06669, VCBC06669 (genetic_marker) Vaccinium corymbosum

Marker Overview
NameVCBC06669
Genbank IDN/A
TypeEST-SSR
SpeciesVaccinium corymbosum
Repeat Motif(tttc)3
Primer 1VCBC06669.forward primer: CATGAGTGGGGTAAGAAGAAGG
Primer 2VCBC06669.reverse primer: CCCTACAGCATAAACGGGTTAG
Max Length323
Publication[view all]
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vcev1_p0.Chr04supercontigVcev1_p0.Chr04:38798402..38798704 .Vaccinium caesariense clone W85-20 P0 v2.0 genome sequenceGDV marker alignment to genome using primer sequences
scaffold00072supercontigscaffold00072:367774..368076 .Vaccinium corymbosum W8520 draft genome sequenceGDV marker alignment to genome using primer sequences
chr4_H1supercontigchr4_H1:30964792..30965091 .Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequenceGDV marker alignment to genome using primer sequences
Vmac_chr11supercontigVmac_chr11:30392967..30393269 .Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequenceGDV marker alignment to genome using primer sequences
chr11supercontigchr11:28730478..28730780 .Vaccinium macrocarpon cv. Stevens v1.0 genome sequenceGDV marker alignment to genome using primer sequences
Chr04supercontigChr04:28206763..28207062 .Vaccinium myrtillus isolate NK2018 v1.0 genome sequenceGDV marker alignment to genome using primer sequences
Chr04_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1chromosomeChr04_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:34084917..34085216 .Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genomeGDV marker alignment to genome using primer sequences
Chr04_Vaccinium_vitis-idaea_ssp_minuschromosomeChr04_Vaccinium_vitis-idaea_ssp_minus:29760609..29760908 .Vaccinium vitis-idaea ssp. minus v1.0 genomeGDV marker alignment to genome using primer sequences
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Blueberry-F1#10xW85-23-F1LG3N/A61VCB-C06669_298View
2Blueberry-DraperLG3N/A48VCB-C06669View
3Blueberry-F1#10_x_W85-23-F1-2017LG11N/A47.7VCBC06669View
4Blueberry-F1#10-2017LG11N/A48.4VCBC06669View