scaf00001-3

Marker Overview
Namescaf00001-3
Genbank IDN/A
TypeSSR
SpeciesVaccinium sp.
Primer 1scaf00001-3.Forward: AATCTTTCAAACCCTGAAGCAC
Primer 2scaf00001-3.Reverse: GAAGGGAAAGATATTCCCAAGG
Publication[view all]
ContactBrandon Schlautman
Contact
NameDetails
Brandon Schlautman
First name:Brandon
Last name:Schlautman
Institution:Department of Horticulture, University of Wisconsin-Madison
Address:Department of Horticulture, University of Wisconsin-Madison, 1575 Linden Dr. Madison, WI 53706, USA
Country:USA
Email:schlautman@wisc.edu
Last update:Apr 2017
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vcev1_p0.Chr10supercontigVcev1_p0.Chr10:931852..932118 .Vaccinium caesariense clone W85-20 P0 v2.0 genome sequenceGDV marker alignment to genome using primer sequences
VaccDscaff20supercontigVaccDscaff20:696990..697259 .Vaccinium corymbosum cv. Draper v1.0 genome sequenceGDV marker alignment to genome using primer sequences
scaffold00001supercontigscaffold00001:371702..371965 .Vaccinium corymbosum W8520 draft genome sequenceGDV marker alignment to genome using primer sequences
chr10_H1supercontigchr10_H1:631287..631559 .Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequenceGDV marker alignment to genome using primer sequences
Vmac_chr08supercontigVmac_chr08:534206..534475 .Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequenceGDV marker alignment to genome using primer sequences
chr8supercontigchr8:722967..723236 .Vaccinium macrocarpon cv. Stevens v1.0 genome sequenceGDV marker alignment to genome using primer sequences
Chr10supercontigChr10:34599424..34599696 .Vaccinium myrtillus isolate NK2018 v1.0 genome sequenceGDV marker alignment to genome using primer sequences
Chr10_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1chromosomeChr10_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:39838796..39839068 .Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genomeGDV marker alignment to genome using primer sequences
Chr10_Vaccinium_vitis-idaea_ssp_minuschromosomeChr10_Vaccinium_vitis-idaea_ssp_minus:36340810..36341082 .Vaccinium vitis-idaea ssp. minus v1.0 genomeGDV marker alignment to genome using primer sequences