scaf00002-5 | GDV

Marker Overview

Marker Overview


Name	scaf00002-5
Genbank ID	N/A
Type	SSR
Species	Vaccinium sp.
Primer 1	scaf00002-5.Forward: TTTCACTGTTCGCTCTAGTTGC
Primer 2	scaf00002-5.Reverse: GGTAGGTCCAAAGTTGAAGACG
Publication	[view all]
Contact	Brandon Schlautman

Contact

Name

Details

Brandon Schlautman

First name:	Brandon
Last name:	Schlautman
Institution:	Department of Horticulture, University of Wisconsin-Madison
Address:	Department of Horticulture, University of Wisconsin-Madison, 1575 Linden Dr. Madison, WI 53706, USA
Country:	USA
Email:	schlautman@wisc.edu
Last update:	Apr 2017

Publications


Year	Publication
2018	Schlautman B, Diaz-Garcia L, Covarrubias-Pazaran G, Schlautman N, Vorsa N, Polashock J, Ogden E, Brown A, Lin Y, Bassil N, Buck E, Wiedow C, McCallum S, Graham J, Iorizzo M, Rowland L, Zalapa J. Comparative genetic mapping reveals synteny and collinearity between the American cranberry and diploid blueberry genomes. Molecular breeding. 2018; 38(1):9.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Blueberry-F1#10_x_W85-23-F1-2017	LG09	N/A	58.7	scaf00002-5	View
2	Blueberry-F1#10-2017	LG09	N/A	90.4	scaf00002-5	View

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Vcev1_p0.Chr06	supercontig	Vcev1_p0.Chr06:53308280..53308431 .
VaccDscaff51	supercontig	VaccDscaff51:1017798..1017952 .
scaffold00002	supercontig	scaffold00002:586234..586528 .
chr6_H1	supercontig	chr6_H1:44395814..44395965 .
Vmac_chr09	supercontig	Vmac_chr09:40481036..40481187 .
chr9	supercontig	chr9:1034122..1034273 .
Chr06	supercontig	Chr06:1045995..1046155 .
Chr06_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr06_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:1208095..1208245 .
Chr06_Vaccinium_vitis-idaea_ssp_minus	chromosome	Chr06_Vaccinium_vitis-idaea_ssp_minus:1183026..1183176 .