scaf00002-5

Marker Overview
Namescaf00002-5
Genbank IDN/A
TypeSSR
SpeciesVaccinium sp.
Primer 1scaf00002-5.Forward: TTTCACTGTTCGCTCTAGTTGC
Primer 2scaf00002-5.Reverse: GGTAGGTCCAAAGTTGAAGACG
Publication[view all]
ContactBrandon Schlautman
Contact
NameDetails
Brandon Schlautman
First name:Brandon
Last name:Schlautman
Institution:Department of Horticulture, University of Wisconsin-Madison
Address:Department of Horticulture, University of Wisconsin-Madison, 1575 Linden Dr. Madison, WI 53706, USA
Country:USA
Email:schlautman@wisc.edu
Last update:Apr 2017
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vcev1_p0.Chr06supercontigVcev1_p0.Chr06:53308280..53308431 .Vaccinium caesariense clone W85-20 P0 v2.0 genome sequenceGDV marker alignment to genome using primer sequences
VaccDscaff51supercontigVaccDscaff51:1017798..1017952 .Vaccinium corymbosum cv. Draper v1.0 genome sequenceGDV marker alignment to genome using primer sequences
scaffold00002supercontigscaffold00002:586234..586528 .Vaccinium corymbosum W8520 draft genome sequenceGDV marker alignment to genome using primer sequences
chr6_H1supercontigchr6_H1:44395814..44395965 .Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequenceGDV marker alignment to genome using primer sequences
Vmac_chr09supercontigVmac_chr09:40481036..40481187 .Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequenceGDV marker alignment to genome using primer sequences
chr9supercontigchr9:1034122..1034273 .Vaccinium macrocarpon cv. Stevens v1.0 genome sequenceGDV marker alignment to genome using primer sequences
Chr06supercontigChr06:1045995..1046155 .Vaccinium myrtillus isolate NK2018 v1.0 genome sequenceGDV marker alignment to genome using primer sequences
Chr06_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1chromosomeChr06_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:1208095..1208245 .Vaccinium vitis-idaea ssp. vitis-idaea cv. Red Candy v1.0 genomeGDV marker alignment to genome using primer sequences
Chr06_Vaccinium_vitis-idaea_ssp_minuschromosomeChr06_Vaccinium_vitis-idaea_ssp_minus:1183026..1183176 .Vaccinium vitis-idaea ssp. minus v1.0 genomeGDV marker alignment to genome using primer sequences
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Blueberry-F1#10_x_W85-23-F1-2017LG09N/A58.7scaf00002-5View
2Blueberry-F1#10-2017LG09N/A90.4scaf00002-5View