scaf00246 | GDV

Marker Overview

Marker Overview


Name	scaf00246
Genbank ID	N/A
Type	SSR
Species	Vaccinium sp.
Primer 1	scaf00246.Forward: TAAGAAAAGGAGAAGCACAGGC
Primer 2	scaf00246.Reverse: CATCACACTAGCAGAAGGCATC
Publication	[view all]
Contact	Brandon Schlautman

Contact

Name

Details

Brandon Schlautman

First name:	Brandon
Last name:	Schlautman
Institution:	Department of Horticulture, University of Wisconsin-Madison
Address:	Department of Horticulture, University of Wisconsin-Madison, 1575 Linden Dr. Madison, WI 53706, USA
Country:	USA
Email:	schlautman@wisc.edu
Last update:	Apr 2017

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
VaccDscaff12	supercontig	VaccDscaff12:35089216..35089501 .	Vaccinium corymbosum cv. Draper v1.0 genome sequence	GDV marker alignment to genome using primer sequences
scaffold00246	supercontig	scaffold00246:3122..3413 .	Vaccinium corymbosum W8520 draft genome sequence	GDV marker alignment to genome using primer sequences
chr7_H1	supercontig	chr7_H1:30485426..30485723 .	Vaccinium darrowii clone NJ8810/NJ8807 v1.2 genome sequence	GDV marker alignment to genome using primer sequences
Vmac_chr10	supercontig	Vmac_chr10:27871636..27871910 .	Vaccinium macrocarpon cv. Ben Lear v1.0 genome sequence	GDV marker alignment to genome using primer sequences
chr10	supercontig	chr10:27003187..27003461 .	Vaccinium macrocarpon cv. Stevens v1.0 genome sequence	GDV marker alignment to genome using primer sequences
Chr07	supercontig	Chr07:4746256..4746584 .	Vaccinium myrtillus isolate NK2018 v1.0 genome sequence	GDV marker alignment to genome using primer sequences

Publications


Year	Publication
2018	Schlautman B, Diaz-Garcia L, Covarrubias-Pazaran G, Schlautman N, Vorsa N, Polashock J, Ogden E, Brown A, Lin Y, Bassil N, Buck E, Wiedow C, McCallum S, Graham J, Iorizzo M, Rowland L, Zalapa J. Comparative genetic mapping reveals synteny and collinearity between the American cranberry and diploid blueberry genomes. Molecular breeding. 2018; 38(1):9.